Pseudomonas sp. UW4: PputUW4_03510
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Entry
PputUW4_03510 CDS
T02357
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ppuu
Pseudomonas sp. UW4
Pathway
ppuu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppuu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PputUW4_03510 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppuu03400
]
PputUW4_03510 (mfd)
Enzymes [BR:
ppuu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PputUW4_03510 (mfd)
DNA repair and recombination proteins [BR:
ppuu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PputUW4_03510 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
SNF2-rel_dom
ERCC3_RAD25_C
AroM
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AFY20703
UniProt:
K9NNI2
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All DBs
Position
4075163..4078612
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVLRLPLLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELGF
FAPDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELSHGVLVVPITTALHRLAPT
KFLLGSSLVLDIGQKLDVEQMRTRLEATGYRYVDTVYEHGEFTVRGSLIDLFPMGSKLPY
RIDLFDDEIETLRTFDPENQRSIDKVDSVKLLPAKEFPLQKEAVTRFKARFRERFDVDFR
RCPIFQDLSSGITPAGIEYYLPLFFEETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPSRPLLPPAELFLPVEDCFARLKNWPRVVASQQDVESGGGRERFPARELPNL
AIEAKATQPLAALADFLDQFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFLAS
KERLAITIAPLDEGLVLDDPALALVAESPLFGQRVMQRRRREKRADANNDAVIKNLTELR
EGAPVVHIDHGVGRYLGLATLEIDNQTAEFLALEYAEGAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGFP
FEETPDQQTTIEAVREDMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAILVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAVADLAEGKIDIVIGTHKLLQDDV
KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
GIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITPDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKSIRKGEQPNLDQPLGGGPEVNLRVPALIPEDYLP
DVHARLILYKRIASATDEDGLKDLQVEMIDRFGLLPEPTKNLIRITALKLQAEQLGIKKV
DGGPQGGRVEFAAQTPVDPLTLIKLIQSQPKRYKFEGATMFKFMVPMERPEERFNTVEAL
FERLVPKTA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgttctgcgtctaccgcttctccctgccgcggcaggtaaacagcactggggcaac
ctgcccggtgccgccctgagcctggccattgccgaggccgccagcgctgccaagcgcttt
accctgctgctgaccgccgacagccaaagtgccgaacggctggaacaggagctgggtttc
ttcgccccggatttgcccgtactgcactttcccgactgggaaaccctgccctacgacctg
ttctcgccgcaccaggacatcatttcccagcgcatcgccagcctgtaccggttgccggaa
ctgagccatggcgtactggtggtgccgatcacgaccgccctgcatcgcctggcaccgacc
aaattcctgctcggcagcagcctggtgctggacatcggccagaaactcgacgtcgagcaa
atgcgcacccggcttgaagccacgggttatcgctacgtcgatacggtgtatgaacacggc
gagttcaccgttcgcggctcgttgatcgacctgttcccgatgggcagcaagttgccgtat
cgcatcgacctgttcgacgacgaaatcgaaaccctgcgcaccttcgacccggagaaccag
cgttcgatcgacaaagtcgactcggtcaagctgttgccggccaaggagttcccgctacag
aaagaagcggtcacccgtttcaaggcgcgcttccgtgagcgttttgacgtcgacttccgc
cgctgcccgattttccaggatttgagcagcgggattaccccggccggcatcgagtactac
ctgccgctgttcttcgaggaaacctcgacgctgttcgattacttgccccaggacacgcaa
gtgttttccctgccgggcatcgagcaagccgcggaaaacttctggaacgacgtgcgcaat
cgctatgaagaacgccgtgtcgacccgtcccgtcctttattgccgcctgccgaactgttc
ctgccggtggaagactgcttcgcacgcctgaagaactggccgcgcgtggtggccagtcaa
caggatgtggaaagtggtggcggtcgcgagcgcttcccggctcgcgagttgccgaacctg
gccatcgaagccaaggctacccagccgttggcggcattggcggacttcctcgaccagttc
cccggtcgcgtgctgttcaccgcagaatccgcaggccgccgcgaagtgctgctggaactg
ctggaacgcctgaagctgcgaccgaaaaccgtcgacagctggccggacttcctcgccagc
aaagaacgcttggcgatcaccatcgcaccgctcgacgaaggcctggtgctagacgatcca
gctctggccctggtcgccgaaagcccgttgttcggccagcgcgtgatgcagcgccgtcgc
cgcgaaaagcgcgccgatgccaacaacgacgcggtcatcaagaacctcaccgagctgcgc
gaaggggcgccggtggtgcacatcgaccatggtgtcggccgttacctgggcctggcaacc
ctggaaatcgacaaccagaccgccgaattccttgccctggaatatgccgaaggcgccaag
ctctacgtgccggtggccaacctgcacctgatcgcccgctacaccggcagcgatgacgcc
ctggccccgctgcaccgcctcggttccgagacctggcagaaagccaagcgcaaagccgcc
gaacaggtgcgcgacgtggccgccgagttgctcgacatctatgcacgccgcgccgcccgt
gaaggctacgccttcgccgacccgaaagccgactacgccaccttcagcgccggtttcccg
ttcgaagaaaccccggaccagcaaaccaccatcgaagcggttcgcgaagacatgctcgcg
cccaagccaatggatcgcctggtgtgcggcgacgtcggcttcggcaagactgaagtggcg
atgcgcgccgcgttcatcgcggtgcatggcggcaagcaagtggcgatcctagtgccgact
accctgctcgcccagcagcattacaacagtttccgcgaccgcttcgccgactggccggtg
accgtggaagtgatgagccgcttcaagtcggccaaggaagtgaatgccgccgtagccgat
ctggccgaaggcaagatcgacatcgtcatcggcacgcacaagctgctgcaggatgatgtg
aagatcaaaaacctgggccttgtgatcatcgacgaggaacaccgtttcggcgtgcgccag
aaagaacagctcaaggccctgcgcagcgaagtcgacatcctgaccctgaccgccacgccg
attccgcgcacgctgaacatggcggtgtcgggcatgcgtgacctgtcgatcatcgccacc
ccgccggcccgccgcctgtcggtacgcaccttcgtcatggagcagaacaagagcacggtc
aaagaggccttgctgcgtgagctgctgcgtggcggccaggtctattacctgcacaacgac
gtgaagaccatcgagaaatgcgccgccgacctcgccgagctggtaccggaagcacggatc
ggcatcggtcacggacagatgcgcgaacgcgaactcgaacaggtgatgagcgacttctac
cacaagcgcttcaacgtgctgatcgcctcgaccatcatcgagaccggcatcgacgtaccg
agcgccaacaccatcatcatcgagcgtgccgacaagttcggcctggcccagctgcaccag
ctgcgcggccgggtcgggcgcagtcaccaccaggcctacgcctacctgctgacgccaccg
cgccagcaaatcacgccggacgcggaaaagcgcctggaagcgatcgccaacacccaggac
ctcggcgcgggcttcgtgctcgccaccaacgacctggaaatccgtggtgccggcgaactg
ctcggtgacggtcagagcgggcagatccaggcggtcggctttacgctgtacatggaaatg
ctcgagcgcgcggtgaagtcgatccgcaagggcgagcagccgaacctcgatcaaccgctc
ggcggtgggcctgaagtcaacctgcgagtgccggcactgattccggaagactacctgccg
gatgtccacgcccgcctgattctctacaagcgcattgcctcggccaccgatgaggacggc
ctcaaggatttgcaggtggagatgatcgatcgattcggcctgttgccggaaccgaccaag
aacctgatccgcatcactgcattgaagttgcaggccgagcaactgggcatcaagaaagtc
gacggcggcccgcaaggcggacgcgtcgagttcgctgcgcagacgccggtcgacccgttg
accctgatcaagctgatccagagccagccaaaacgctataaattcgaaggggccacgatg
ttcaagttcatggttccgatggagcgcccggaagagcgctttaatactgtagaggcgctg
ttcgagcgcctcgttccgaaaactgcttga
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integrated database retrieval system
