Pseudomonas putida DOT-T1E: T1E_1223
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Entry
T1E_1223 CDS
T02181
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ppx
Pseudomonas putida DOT-T1E
Pathway
ppx03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
T1E_1223 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppx03400
]
T1E_1223 (mfd)
Enzymes [BR:
ppx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
T1E_1223 (mfd)
DNA repair and recombination proteins [BR:
ppx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
T1E_1223 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AroM
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AFO47080
UniProt:
I7AWM7
LinkDB
All DBs
Position
complement(1406668..1410093)
Genome browser
AA seq
1141 aa
AA seq
DB search
MSATAGKQTWGNLPGAALSLAIAEAASSAGRFTLLLTADSQAADRLEQELRFFAPDLPVL
PFPDWETLPYDLFSPHQDIISQRIASLYRLPELSHGILVVPITTALHRLAPTRFLLGSSL
VLDVGQTIDVEQMRLRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPYRIDLFDNE
IETLRTFDPETQRSIDKVDSVRLLPAREFPMQKEEVTRFKARFRERFDVDFRRSAIFQDL
ASGIIPAGIEYYLPLFFEETSTLFDYLPTDTQVFSLPGVEQAAEHFWNDVRGRYEDRRGD
LSRPLLPPAELFLPVEDCFARLKQWPRVVVSSEALEPGVGRERFPARALPNLAIEAKANQ
PLAELANFLDQFPGRVLFTAESAGRREVLLELLERLKLRPHTVEGWDDFITGAERLAITI
APLDDGLLLDDPGLALIAESPLFGQRVMQRRRRDKRGETANDAVIKNLTELREGAPVVHI
DHGVGRYLGLATLEIDGQAAEFLTLEYAENAKLYVPVANLHLIARYTGSDDALAPLHRLG
SEAWQKAKRKAAEQVRDVAAELLDIYARRAARKGYAFADPSADYATFSAGFPFEETPDQQ
AAIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAVLVPTTLLAQQHY
NSFRDRFADWPVTVEVMSRFKSAKEVAAAAADLAEGKIDILIGTHKLLQDDVRFKDLGLA
IIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSIIATPPARRLSV
RTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARIGIGHGQMR
ERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIVIERADKFGLAQLHQLRGRVGRS
HHQAYAYLLTPTRQKVSADAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELLGEGQSGQ
IQAVGFTLYMEMLERAVKAIRKGTQPNLEQPLGGGPEINLRLPALIPEDYLPDVHARLIL
YKRIASAADEEGLKDLQVEMIDRFGLLPEPTKNLMRLTSLKLHAEKLGIKKVDAGPNGGK
LEFEAETPVDPLTLIKLIQGQPKRYKFEGATQFRFLVPMERPDERFNTLEALFERLTPQP
A
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccacggccggcaaacaaacctggggcaacctgcccggtgccgccctcagcctt
gccatcgccgaagccgccagcagcgctggccgcttcaccctgctgctgacggccgacagc
caggccgccgaccgtctggagcaggagctgcgcttctttgccccagacctgccagtgctg
ccgttccccgattgggaaaccctgccctacgacctgttctcgccacaccaggacatcatc
tcccagcgcatcgccagcctgtaccgtctgccggagctgagccacggcatcctcgtggtg
ccgatcaccaccgccctgcaccgcctggcacccacgcgttttctgctgggcagcagcctg
gtgctggatgtgggccagaccatcgacgtggaacagatgcgcctgcgcctggaggccagc
ggctaccgttgtgtcgacaccgtctacgagcatggcgagttcgccgtgcgcggcgcgctg
atcgacctgttcccgatgggcagcaagctgccctaccgcatcgacctgttcgataacgag
atcgagacgctgcgcaccttcgaccccgagacccagcgctcgatcgacaaggtggattcg
gtgcgcctgctgccagcacgcgaattcccgatgcagaaggaagaagtgacccgcttcaag
gcacgctttcgcgagcgcttcgacgtcgacttccgccgcagtgcaatcttccaggacctg
gccagcggcatcatccccgccggtatcgagtactacctgccgctgttcttcgaagaaacc
tcgaccctgttcgactacctgccgaccgacacccaggtgttctcgctacccggtgtggaa
caggccgccgagcacttctggaacgacgtgcgcgggcgctatgaagaccgccgcggcgac
ctcagccggccgctgttgccgccggccgagctgttcctgccggtggaagattgcttcgcc
cggctcaagcagtggccccgggtggtggtcagcagcgaagcgctggagcctggcgtgggc
cgcgagcgcttcccggcgcgcgccttgcccaacctggccatcgaggccaaggccaaccag
ccgctggccgagctggccaacttcctcgatcagttccccggccgcgtgctcttcacagcc
gaatcagcgggccgccgggaagtgctgctggagctgctcgaacggctgaagctgcgcccg
cataccgtcgaaggctgggacgatttcattaccggtgccgagcgcctggcgatcaccatc
gccccgctggacgacggcctgctgctggacgatccagggctggccctgattgccgaaagc
ccactgttcggccagcgagtgatgcagcgccggcgccgtgacaagcgcggcgaaaccgcc
aacgacgcggtcatcaagaacctcaccgagctgcgcgaaggtgcgccggtggtgcacatc
gaccatggcgtcgggcgctacctgggcctggccaccctggaaatcgacggccaggctgcc
gaattcctgacactggaatacgccgagaacgccaagctgtatgtgccggtggccaacctg
cacctgatcgcccgctacaccggcagcgacgacgccctggcaccgttgcaccggctgggt
tcggaggcctggcagaaagccaagcgcaaggccgccgaacaggtccgcgacgtggccgcc
gaactgctcgacatctatgcccgccgcgccgcgcgcaagggctacgcgtttgccgacccg
tccgccgactacgccactttcagcgccggcttcccgttcgaggaaaccccggaccagcag
gccgccatcgaggccgtgcgcgccgacatgctggcacccaagccaatggaccgcctggtc
tgcggcgacgtgggcttcggcaagaccgaagtggccatgcgcgcggcgttcatcgccgtg
cacagtggccgccaggtggccgtactggtgcccaccaccctgcttgcccagcagcattac
aacagcttccgcgaccgctttgccgactggcccgtgaccgtggaagtgatgagccgcttc
aaatcggccaaggaagtggccgccgccgccgcggaccttgccgaaggcaagatcgacatc
ctcatcggcacccacaagctgctgcaggatgacgtgcgcttcaaagacctgggcctggcc
atcatcgatgaagagcaccgctttggcgtgcgccagaaagaacagttgaaggcgctgcgc
agcgaggtcgatatcctcaccctgaccgccacgccgattccgcgcacgctgaacatggcg
gtggcgggcatgcgcgacctgtcgatcatcgccacgccgccagcacgccgcctgtcggtg
cgcaccttcgtcatggaacagaacaagagcacggtcaaggaggcgctgctgcgcgaactg
ttgcgcggtggccaggtgtattacctgcacaacgatgtgaaaaccatcgaaaaatgcgcc
gccgaccttgccgagctggtgcccgaggcacgcatcggcatcggccacgggcaaatgcgc
gaacgcgagctggaacaggtgatgagcgatttctaccacaagcgtttcaacgtgctggtg
gcctcgaccattatcgaaaccggtatcgacgtgcccagcgccaacaccatcgtcatcgag
cgcgccgacaagttcggcctggcccagctgcaccagctgcgtggccgggttggccgtagt
caccaccaggcctacgcctacctgctcacacctacccgtcagaaggtgagcgccgacgcc
gaaaagcgcctggaggcgatcgccaacacgcaagaccttggcgcaggctttgtgctggcc
accaacgacctggaaatccgcggcgccggcgagctgctgggcgaaggccagagcgggcag
atccaggcagtgggcttcaccctgtacatggaaatgctcgaacgtgcggtcaaggcaatc
cgaaaaggtacccagccgaaccttgagcaaccactgggtggcggcccggagatcaacctg
cgcctgccggcactgatccccgaggactacctgcctgacgtgcatgcgcgcctgatcctg
tacaaacgcattgcctcggctgccgacgaagagggcctcaaggacttgcaggtcgagatg
atcgaccgcttcggcttgttgccagagccgaccaagaacctgatgcgcctgacgtcactc
aagctgcacgcggaaaagctcggcatcaagaaagtcgatgcggggcccaacggtggcaag
ctcgagttcgaagccgaaacaccggtcgacccactgaccctgatcaagctgatccagggt
caacccaaacgctacaagttcgaaggcgccacccagttccgcttcctggtaccgatggaa
cgccccgacgaacgtttcaataccctggaggcgctgttcgagcgcctgaccccacagcct
gcctaa
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