Photinus pyralis (common eastern firefly): 116162984
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Entry
116162984 CDS
T07438
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ppyr
Photinus pyralis (common eastern firefly)
Pathway
ppyr03013
Nucleocytoplasmic transport
ppyr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ppyr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116162984
03015 mRNA surveillance pathway
116162984
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppyr03019
]
116162984
Enzymes [BR:
ppyr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
116162984
5.6.2.5 RNA 5'-3' helicase
116162984
Messenger RNA biogenesis [BR:
ppyr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
116162984
mRNA cycle factors
Common to processing body (P body) and stress granule
116162984
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
Helicase_RecD
ATPase
UvrD-helicase
SRP54
AAA_16
AAA_22
nSTAND3
AAA_10
AAA_7
AAA_5
Motif
Other DBs
NCBI-GeneID:
116162984
NCBI-ProteinID:
XP_031332648
LinkDB
All DBs
Position
Unknown
AA seq
1102 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEEADLIGADTQGSECDFTDFTIPSQTQASQHDHSNTHVTGIQ
VNGVPHKSTNIISKISAATTALGELQFEEDDEEFYNSKELPDYACKYCGIHEPNCVVMCN
LCKKWFCNGRGNTSGSHIINHLVRAKHKEVTLHKDGPLGETVLECYSCGVRNVFVLGFIP
AKADSVVVLLCRQPCAAQNSLKDMNWEQEQWKPLISDRSFLTWLVKIPSEQEQLRARQIT
AQQINKLEELWKDNVDATFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKLEADYDK
RLKESQTQENIEVRWDVGLNKKTIAYFTLAKTDGDMKLMHGDELRLRYVGEMHKTWAGVG
HVIKVPDNYGEDIGIELKNGAGAPSECHSNFVVDFIWKSTSFDRMQLALRKFAVDDTSVS
AYIYHRLLGHEVEEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHALQRPLSLIQGPPGTGK
TVTSATIVYQLVKQNGGPVLVCAPSNTAVDQLTEKIHRTNLKVVRLCAKSREAIDSPVSF
LALHNQIRKLDTNTELQKLQQLKDETGELSSVDEKRYRMLKKSAERELLEAADVICCTCV
GAGDPRLVRLKFHSILIDESMQATEPECMVPVVLGVKQLILVGDHCQLGPVVMCKKAARA
GLSQSLFERLVVLGIRPFRLEVQYRMHPELSRFPSNFFYEGSLQNGVCADERKLLKIDFP
WPVLDRPMFFYVTQGQEEIAGSGTSYLNRTEAANVEKIATRFLKSGIKPEQIGIITPYEG
QRAYLVQYMQYQGSLHGKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDPRR
LNVALTRAKYGIIIAGNPKVLSKQPLWNHLLSFYKEQKVLVEGPLTNLKESLIQFAKPKK
LINSENPGSHFMTTSMFDAREAMVPGSVYDRNNVTMNGGSYSYPRGAVPLDMFSRTHDPI
SYISPERAQANTNNLPVPMGMFMNMAHIPPRFYNQHQQALQRQVQNSRNRKTPIRQRNKG
LSQEQTQPFSQSLQLTQGMSQPGLSQPGFSLSQPGLSQPELSQDPYMTEYQSQLDGLLSQ
DSTYQGDRSAFYQPNAQFSQPY
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggatgcgtatggtccaagttcacaaacactcacgtttttggatacagaagaa
gctgatttaataggcgctgatacacaaggttccgaatgtgattttaccgatttcactata
ccatcgcaaactcaagcctcccaacatgatcattctaacacgcacgttaccggaatacaa
gttaacggagtgccacacaagtcaactaacataattagcaaaatatcggctgcgacaact
gctttgggagagttacagtttgaggaagatgacgaagagttttacaatagtaaggaattg
cccgactatgcttgcaaatactgtggaattcacgagccgaactgtgtagtgatgtgtaac
ctgtgtaagaagtggttttgcaatggacgcgggaacacatccggcagtcatattattaat
cacttggttcgtgccaaacacaaagaggttactctgcacaaggatggtcccttgggagaa
acggttttagagtgttacagttgtggtgttcgtaatgtctttgtgctaggatttattcct
gcaaaggcagattctgttgttgtgcttttatgtcgtcagccatgtgctgcacaaaactcg
ttaaaggatatgaattgggaacaagagcaatggaagcccctaatttctgatcgcagtttc
ttaacgtggctagtcaaaataccatccgagcaagaacaattgagagcacgtcaaattacg
gcgcagcaaataaataaattggaagaactgtggaaggataacgtcgacgccacgtttcaa
gatctcgagaaaccgggcgttgacgaagagccccagcaagtactgttacgctacgaggac
gggtatcaataccaaaatattttcggtccgctcgtgaagttagaggcagactacgataag
cgtttgaaggagtcgcagactcaagaaaatatcgaagttaggtgggatgtcggtttaaat
aagaagacgatcgcctattttactttggcgaagacggacggtgacatgaagcttatgcat
ggagatgaactgcggcttcggtacgtgggtgaaatgcacaaaacctgggctggagttgga
cacgttattaaagtaccagacaattatggagaagatattgggatcgagcttaagaatggt
gcgggtgcgcccagcgaatgccatagcaattttgtggtggattttatttggaaaagtacc
agttttgataggatgcagctggcgcttagaaaattcgctgtggacgacacaagcgtatcc
gcttacatataccatcgccttctcggccacgaagtagaagaggtcctattccgttgtcat
ctccccaaacacttttctgcacctaacctaccagatctcaatcgctcacaagtctatgcc
gttaagcatgcgttacagagacctctgtctttaatacagggccctccgggtacaggtaaa
acggtcacctcagcaaccattgtctatcagctggttaagcagaacggtggaccggtgctg
gtttgtgccccgagcaatacggcggtagatcagctaactgaaaaaattcaccgtaccaac
ttgaaagttgtacgtttatgcgcaaaatcgagggaagcgatcgactcgcccgttagcttt
ctggcgttgcacaatcaaattcggaaattggacacgaacacggaactacaaaagctgcag
cagttgaaagacgaaaccggggaattaagctcggtggatgagaaacggtatcgaatgcta
aaaaaatccgccgagagggagctgttggaagcggccgatgttatttgctgtacatgtgtt
ggtgccggtgatccccgtcttgtccggctcaagtttcattccattttaattgacgaaagt
atgcaggcgacggaacccgagtgtatggtgcccgtggtactgggggtaaagcagttgata
ttggtgggagaccactgtcaattaggtcccgttgtcatgtgtaagaaggcggctcgcgcg
ggtctttctcagagtttgttcgaacgacttgtcgtgttggggataaggcctttccgtttg
gaagtccaatatcgtatgcatccggagttgtcgagatttccatcgaatttcttttatgag
ggtagcctacagaatggcgtctgtgcagatgaacgtaaactgttgaagatagatttccca
tggcccgttttagacagacctatgttcttttatgtaacacaaggtcaagaagaaatcgcc
ggttccggtaccagttatttaaatcgtacagaagctgctaatgttgagaagatagccacc
cgatttttaaaatccggtattaagcccgaacaaattggaataataacgccttatgaagga
cagcgggcttatttagtacagtatatgcaatatcaaggttcacttcatggaaaactctat
caagaaattgaggttgctagtgtggacgctttccaaggtagagaaaaggacataatcatc
atgtcgtgtgttcgctcaaatgaacaccaaggtatagggttcttaaacgatccacgccgc
ttaaatgtcgcattaactcgagccaagtacggaattatcatcgctggaaatccgaaagta
ttatctaaacagcccttgtggaaccacctcttgagcttctacaaagaacaaaaggtgctc
gtagaaggaccgcttactaatttaaaagaatctctgattcaatttgcgaaaccaaaaaaa
ttgattaattctgaaaatccaggatctcactttatgaccacatccatgttcgatgcacgt
gaggctatggttcccggttcagtttacgatcgtaataatgtgacgatgaatggaggatcc
tatagttaccccagaggtgcagttcctctcgatatgtttagtagaactcacgatccgata
agttacatctccccggaacgcgcccaggccaacactaacaacttaccggttccaatggga
atgtttatgaacatggcgcacattcctccccgattctataaccaacaccagcaagcgtta
caacgtcaagttcaaaactcgcgcaatcgtaaaacgcccatacgtcaacgcaacaaagga
ctaagtcaagaacagacacaaccgtttagtcaaagcttacaattaacacaaggcatgtca
caacctggattatcccaacccggatttagcctctcgcaacccggactatctcaacccgaa
ttgagtcaagatccgtatatgaccgagtatcagtcccaactggacggcttactatcccaa
gattcgacgtatcaaggagatcgatcggcgttctaccaaccgaatgcccaattttcacaa
ccctattaa
DBGET
integrated database retrieval system
