Pseudomonas poae: H045_04340
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Entry
H045_04340 CDS
T02456
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ppz
Pseudomonas poae
Pathway
ppz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
H045_04340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppz03400
]
H045_04340
Enzymes [BR:
ppz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
H045_04340
DNA repair and recombination proteins [BR:
ppz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
H045_04340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
SNF2-rel_dom
ERCC3_RAD25_C
AroM
Motif
Other DBs
NCBI-ProteinID:
AGE24944
LinkDB
All DBs
Position
complement(932169..935618)
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVLRLPLLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSF
FAPDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELAHGVLVVPITTALHRLAPT
KFLLGSSLVLDIGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPENQRSIDKVDSVKLLPAREFPLQKDAVTRFKARFRERFDVDFR
RCPIFQDLSSGITPAGIEYYLPLFFDETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPSRPLLPPAELFLPVEDCFARLKNWPRVVASQQDVDAGSGRERFPAATLPDL
SIQAKATQPLEALSNFLGDFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVNS
QERLAITIAPLDEGLLLDDPALALIAESPLFGQRVMQRRRREKRADHNNDAVIKNLTELR
EGAPVVHIDHGVGRYLGLQTLEIDNQAAEFLTMEYAEGAKLYVPVASLHLIARYTGSDDA
LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGFA
FEETPDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPT
TLLAQQHYNSFRDRFADWPVSVEVMSRFKSAKEVNAAIADLAEGKIDIVIGTHKLLSDDV
KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
AIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITSDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLDQPLGGGPEINLRLPALIPEDYLP
DVHARLILYKRIASATDEEGLKDLQVEMIDRFGLLPDPTKNLVRLTLLKLQAEQLGIKKV
DAGPQGGRIEFEAQTPVDPLVLIKLIQGQPNRYKFEGATLFKFMVPMERPEERFNTLEAL
FERLIPKSA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgtcctgcgtctaccgctcctccctgccgcggcaggtaaacagcactggggtaac
ctgcccggtgccgccctgagcctggccattgccgaggctgccagcgcagccaagcgcttt
accttgctgctcaccgccgacagccaaagcgccgaacggctggagcaggagctgagcttc
ttcgcgccggatttgccggtgctgcattttcccgactgggaaaccctgccctacgatttg
ttttcgccgcatcaggacatcatttcccagcgcatcgccagcctgtaccgcctgccggag
ctggcccacggcgtgctggtggtgccgatcaccaccgccctgcaccgcctggcgccgacc
aagtttctgttgggcagcagcctggtgctggacatcggccagaagctcgacgtggaacag
atgcgcacgcgcctggaagccagcggctatcgttgcgtcgacacggtatacgagcacggt
gaattcgccgtgcgcggcgcactgatcgacctgttccccatgggcagcaagttgccgtac
cgcatcgacctgttcgatgacgaaatcgagaccctgcgcaccttcgatccggaaaaccag
cgctccatcgataaggtcgactcggtcaaactgttgccggcccgggaatttccgctgcaa
aaagacgcggtcacgcgcttcaaggcgcgctttcgcgaacgcttcgacgtcgacttccgc
cgctgcccgatcttccaggacctgagcagcgggattaccccggcaggtatcgagtactac
ctgccgctgttcttcgacgaaacctccacactgttcgactacctgccccaggacacccag
gtgttctcgctgccgggtatcgagcaggcggcggaaaacttctggaacgacgtgcgcaac
cgctatgaagagcgccgcgtcgacccgtcccgcccgctattgccgcccgccgagctgttc
ctgccggtggaagactgcttcgcccgcctgaaaaactggccgcgcgtagtcgccagccaa
caggacgtggacgccggcagtggccgcgagcgtttcccggccgcgaccctaccggacctg
tccatccaggccaaggccacgcaacctttggaagcgctgtccaacttcctcggcgacttc
ccgggccgcgtgctgtttaccgccgagtccgccgggcgccgcgaagtgctgctggagctg
ctggagcgcctcaagctgcggccgaaaaccgtcgacagctggccggacttcgtcaacagc
caggaacgcctggcgatcaccattgcgccgctggatgaaggcttgctgctggacgacccg
gcgctggcgctgatcgccgaaagcccgctgttcggccagcgcgtgatgcagcgtcgccgc
cgcgaaaaacgcgccgaccacaacaacgacgcggtgatcaagaacctcaccgagttgcgc
gaaggcgcgccggtggtgcatatcgaccacggcgtgggccgctacctcggcctgcagacc
ctggagatcgacaaccaggccgccgaattcctcaccatggaatacgccgaaggcgccaag
ctctatgtgccggtggccagcctgcacttgatcgcccgctacaccggcagcgacgacgcg
ctggcgccgctgcaccgcctcggctccgagacctggcagaaagccaagcgcaaggccgcc
gaacaggtgcgcgacgtggccgccgaactgctcgatatctatgcccggcgtgccgcgcgc
gagggctatgcgttcgccgatcccaaggccgactacgccaccttcagcgccggcttcgcc
ttcgaagaaaccccggaccagcaaaccaccatcgaagccgtgcgcgccgacatgctcgcg
cccaagccgatggaccggctggtgtgcggcgacgtgggcttcggcaagaccgaagtggca
atgcgcgcagccttcattgccgtgcacggcggtcgtcaggtggccatcctggtgccgacc
accctgctcgcccagcagcactacaacagctttcgcgaccgctttgccgactggccggtg
agcgtggaagtgatgagccgcttcaagtcggccaaggaagtcaacgccgccatcgccgac
ctggccgagggcaaaatcgatatcgtcatcgggacgcacaagctgctgtcggacgacgtg
aagatcaagaaccttggcttggtaatcatcgacgaagaacaccgcttcggcgtgcgtcag
aaagaacagctcaaggccctgcgcagtgaagtcgacattctcaccctcaccgccacgccg
attccgcgcacgttgaacatggcggtgtcgggcatgcgcgacctgtcgatcatcgccacg
ccgccggcgcgccggctgtcggtgcgcaccttcgtgatggagcagaacaaaagcacggtc
aaggaagcgctgctgcgtgaactgctgcgcggcgggcaggtgtactacctgcacaacgac
gtgaagaccatcgagaaatgcgccgccgacctcgccgaactggtgccggaagcgcgcatc
gccatcggccacgggcagatgcgcgaacgcgaactcgaacaggtgatgagcgacttctat
cacaagcgcttcaacgtgctgatcgcctccaccatcatcgagaccggcatcgatgtgccg
agcgccaacaccataatcatcgagcgcgccgataaattcggcctggcgcagttgcaccag
ttgcgtggccgtgtcggccgtagccaccaccaggcctacgcctacctgctcacgccgcca
cgccagcagatcacctccgacgccgaaaagcgcctggaagccatcgccaacactcaggac
ctgggcgcaggctttgtgctggccaccaacgacctcgaaatccgaggcgccggcgagttg
ctgggggacggccagagcgggcagatccaggccgtgggcttcaccctctatatggagatg
ctggagcgcgcggtcaaagccatccgcaagggcgagcaacccaacctcgatcaaccgttg
ggcggcggtccggagatcaacctgcgcctgccggcattgattcccgaagactacctgccg
gatgtgcacgcgcggctgatcctgtacaagcgcatcgcctcggccaccgacgaagaaggc
ctcaaggacctgcaggtagagatgatcgaccgcttcggcctgctgcccgacccgaccaag
aacctggtgcgtctgaccctgctcaaattgcaggccgaacagttgggcatcaagaaggtc
gacgccgggccgcagggtgggcgcatcgagtttgaagcgcagacgccggtggacccgctg
gtgctgatcaaactgatccagggccagcccaatcgctacaagttcgaaggggctacgctg
ttcaaattcatggtgccgatggaacgcccggaagaacgcttcaataccctggaggcgctg
tttgagcgcctcattccgaaatccgcttga
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