Pseudomonas poae: H045_08195
Help
Entry
H045_08195 CDS
T02456
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ppz
Pseudomonas poae
Pathway
ppz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ppz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
H045_08195 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppz03400
]
H045_08195 (ligD)
Enzymes [BR:
ppz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
H045_08195 (ligD)
DNA repair and recombination proteins [BR:
ppz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
H045_08195 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
Exo_endo_phos
DNA_ligase_A_C
DNA_primase_S
Exo_endo_phos_2
Motif
Other DBs
NCBI-ProteinID:
AGE25709
LinkDB
All DBs
Position
complement(1824308..1827682)
Genome browser
AA seq
1124 aa
AA seq
DB search
MQNLKIATFNVNGIGARLPNLLQWLDKEQPDIVCLQELKAQDKAFPAAELEAAGYGCLHH
GQAAWNGVAILARDSEPLLIHKGLPGAEDDSQSRYLEAAVHGVVVGCLYLPNGNPQPGPK
FDYKLKWFEHLIEHARTLQASEHPVVLAGDFNVVPTDFDIYSTRSWLKDALLQPQSRECY
QRLLDQGWVDSVRHLYPEERVYTFWDYFRQHWQKNSGLRIDHLLLNPVLAPHLKNAGVDA
WVRGEEHASDHAPTWIELSSRKTRAKKTPKANKALDEYHHKRDFDTTSEPAGGASKGKKR
TEPNALQFCIQKHDASRLHYDFRLELDGTLKSWAVPKGPSLDPKNKRLAVHVEDHPLDYA
TFEGSIPEGHYGAGDVIVWDRGLWKPLSDPAQAYAKGRLKFELQGEKLGGVWNLVKTHMP
GKQEQWFLIKHQDEFARAESDYDVVKAEPHSVLSERTIVPKKTRAAQAKPVDKAPARRAT
PTPTRAKKLENAVASALPQSLKPELATLVDSAPEGEWRYEIKFDGYRILARVEDGKVQLF
TRNGNDWTHKLPRQAEAIASLGLTSAWLDGEVVVANEHGVPDFQALQNAFEQARSGNIVY
YLFDLPFLNGMDLRDVPVEQRRGALAKVLERSDSEVLKYSADFAETPEALLNSACDMHME
GLIGKRVGSAYQSRRSGDWIKLKCKRRQEFVIIGYTEPKGSRSKFGALLLGLHDDDSGEL
RYAGKVGTGFTLATLATIFAQLTPLEVKKPAVVNPPTGFEAKGVHWLKPALLAEVAFAEI
TQDGAVRQAVFHGLRNDKPAESITEERPAPAVKPKTARKTKAMTQTEPDKKGSTTLRLTH
PQRVIDPASGATKRDLANYYISISEWILPQLLNRPVALVRAPDGIGGELFFQKNAEHLAI
PGIEIIGKEETGHPVMLINNIEALVGAVQMNSIELHTWNALSKNLKKPDRFILDLDPDPA
LPWKSMIEATQLTLTVLDELGLKSFLKTSGGKGIHIVVPLTPKADWDAVKSFSHAVVKHI
ANLLPDRFSAVSGPKNRVGKIFIDYLRNGMGATTICAYAARSREGLPVSVPIFKEELKDL
KGANQWTVRNLHERLGELDADPWADLPGTRQTITAQMRKRIGLT
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
atgcagaacctcaagatcgccacattcaacgtcaacggcatcggcgcgcggttgcccaac
ctgttgcagtggctggacaaagagcagccggacattgtctgcctgcaggagctcaaggca
caggacaaagccttcccggctgccgagcttgaggcggccggctacggttgcctgcaccat
gggcaagcggcttggaatggcgtggcgattctcgcccgcgactccgaaccattgttgatt
cacaaaggcttgcccggcgcggaagacgattcgcagtcgcgctacctcgaagcggccgtg
cacggggtggtggtcggttgcctgtacctgcccaacggtaacccgcagccggggcccaag
ttcgactacaagctcaagtggttcgaacacctgatcgaacatgcacgcacgctgcaagca
agcgaacacccggtggtgctggcgggagatttcaatgtggtgcccaccgacttcgacatc
tacagcacccgctcatggctcaaggatgcgctgcttcagccgcagagccgcgagtgttat
caacggttgctggaccagggttgggtcgactcggtgcgtcacctgtatcccgaggagcgg
gtctacacgttctgggattatttccggcaacactggcagaagaattccggcctgcgtatc
gaccatctcctgcttaacccggtactcgccccgcatctcaaaaacgccggtgtcgacgcc
tgggtgcgcggcgaggagcacgccagtgatcatgcgcccacctggatcgagctttcatcg
cgcaaaacacgcgcaaagaagacaccaaaggcgaacaaggctctggacgagtaccaccac
aaacgtgatttcgacacgacttccgaacccgcaggcggcgcgtccaagggcaagaaacgt
accgagccgaacgccctgcagttctgcattcaaaagcacgacgccagccgtctgcattac
gactttcgcctggaactcgacggcaccctcaaaagctgggcggtgcccaaggggccctcg
ctggacccgaaaaacaagcgcctggccgtgcatgtcgaagatcatccgctggactacgcg
acctttgaaggcagcatacccgaaggtcattacggcgccggcgacgttatcgtttgggac
cgcggcctctggaaaccgctgtcggatccggcgcaagcttacgccaaaggccgcctcaaa
ttcgagttgcagggcgaaaagctcgggggcgtgtggaacctggtcaagacgcatatgccg
ggcaagcaggagcaatggtttctgatcaagcatcaggacgagttcgcccgcgccgagagc
gattacgacgtggtgaaggccgagccccacagtgtgctgagcgagcgcaccatcgtgccg
aaaaagaccagggcggcgcaggccaaacctgtcgacaaggcccccgccaggcgcgccacg
cccacgcccacgcgcgcgaagaagctggagaatgccgttgcgtccgcgctgccgcaaagc
ctcaagcctgagctggccacgttggtggattctgcgccggagggtgaatggcgctatgaa
atcaagttcgacggctaccgtatcctggctcgggtggaggacggcaaggtgcaattgttt
acgcgaaacggcaacgactggacgcataagctgccgcgccaggccgaggcgattgccagc
cttggcctcacctccgcctggctcgatggcgaagtggtggtagccaacgaacacggcgtg
ccggatttccaggccttgcagaatgcgttcgagcaggcgcgtagtggcaacatcgtttac
tacctgttcgacctgccctttctcaacggcatggacctgcgtgacgtgccggtggagcaa
cgccggggcgccctggccaaggtgctcgagcgcagcgacagcgaagtactcaagtactcg
gcagacttcgccgaaacgcccgaggcactgctcaacagcgcctgcgacatgcacatggaa
ggtctgatcggcaagcgtgtgggcagtgcgtaccagtcacggcgcagcggcgactggatc
aaactcaaatgcaagcggcgtcaggaattcgtcatcatcggctataccgaacccaagggc
tcgcgcagcaagttcggtgcgctgttgctggggttgcatgatgacgacagcggtgagctg
cgctacgcgggcaaggtgggtaccggcttcaccctggcgacactggcgacgatctttgcg
caattgaccccgcttgaagtcaaaaaacctgcggtggtcaacccgccaacggggttcgag
gccaagggcgtgcattggctcaaacccgcactgctggcagaagtcgcattcgccgaaatc
acccaagacggcgccgtcaggcaggcggtgtttcacgggctgcgtaacgataaacccgcc
gaatcgattaccgaggagcgccctgcccctgccgtcaaacccaaaaccgccaggaagacc
aaggcgatgacccagactgaacccgacaaaaagggctcgaccacgctcaggctcacccat
ccccagcgcgtgatcgaccccgccagcggcgcgaccaagcgtgacctggcgaactattac
atcagcatcagcgaatggatcctgccgcagttgctcaatcgacctgtcgccttggtgcgt
gcgccggatggcattggcggcgagctgttttttcagaaaaacgcagaacacctggcgatt
cccggcattgagatcattggcaaggaagagactggccacccagtgatgctgatcaacaac
atcgaggcgctggtgggcgcggtgcagatgaacagcatcgagctgcacacctggaatgcg
ctgtccaaaaacctgaaaaagcccgatcgcttcattctcgacctggacccggacccggcg
ctgccctggaaaagcatgatcgaggctacccagctgaccttgacggtactggacgaactg
gggctcaaatcctttctcaaaaccagcggcggcaagggtattcacatcgtcgtgccgctg
acgccgaaggccgactgggatgcggtcaaaagcttcagccatgccgtggtcaagcacatc
gccaacctgctgccggatcggttttcggcggtttccgggccgaaaaaccgggtggggaaa
attttcatcgactacctgcgcaatggcatgggcgccaccaccatctgcgcctacgcagca
cgcagccgcgaggggctgccggtgtcagtgccgatcttcaaggaggagttgaaagacctc
aagggcgccaaccaatggactgtgcgcaatctgcatgaacgcctgggcgaactggacgcc
gacccgtgggccgatctgcctgggacccggcaaaccatcacggcgcagatgcgtaagcgc
atcggtttgacgtga
DBGET
integrated database retrieval system
