KEGG   Pseudomonas qingdaonensis: KH389_12295
Entry
KH389_12295       CDS       T07622                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pqi  Pseudomonas qingdaonensis
Pathway
pqi03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pqi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    KH389_12295 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pqi03400]
    KH389_12295 (ligD)
Enzymes [BR:pqi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     KH389_12295 (ligD)
DNA repair and recombination proteins [BR:pqi03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     KH389_12295 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S mRNA_cap_enzyme RNA_ligase
Other DBs
NCBI-ProteinID: QVL21312
LinkDB
Position
complement(2691945..2694446)
AA seq 833 aa
MAKPLQEYQRKRNFDATPEPAGKARRGARAQALQFCIQKHDASHLHYDFRLELNGTLKSW
AIPKGPSLDPKVKRLAVHVEDHPLDYASFEGSIPAGHYGAGEVIVWDRGVWLPEGDPAQA
YASGKLRFRLQGEKLNGTWHLFRTRLGGKKEQWMLVKSDDEAARAEADYDVLQAQPDSVL
SERSLIPRTKGKGKDKDKPKAAPPPRRPARAGTLSAARKATLPAALTPQLATLVETPPQG
DWRYEVKFDGYRILARIDGDDVRLFTRNGHDWTTRMPLQAKALAGLGLSSAWLDGEVVVA
NAEGIADFQALQNAFDSDTDANIVYYLFDLPYLNGMDLRQCPLQERRAALAAVLEPADEQ
RLRLSADFDEAPESLLASSCQMQMEGLIGKRADSLYVSRRSHNWIKLKCKQRQEFVIVGF
TEPKGSRAAFGALLLGVHDADSGQLRYAGKVGTGFNTATLQSLLQRLTPLEVKKPAVANP
PTGAEARGVHWLRPQLLAEVAYAQMTREGVVRHSVFHGLREDKPARAIGLEKPVKAPTRK
ASDNTLRITHPDRVIDASSGTDKRQVAEYYAQVAEWILPHLKRRPVALVRAPEGLSGELF
FQKNAAQLNIPGLESHDKAEAGQAVMIIDRADTLLGAVQMNTLELHTWNATARDFDKPDR
FVLDLDPDPALPWKAMVEATQLTLALLDELGLQAFLKTSGGKGMHVVVPLTRRAGWDEVK
AFSHAIVTHMAGLFPDRLSAVSGPKNRVGRIFIDYLRNARGATTVCAYSLRAREGLPVSV
PIRREELTELKGANQWNLHNLGERLANGDDPWADYDKTRQSLTVALRKRMGVA
NT seq 2502 nt   +upstreamnt  +downstreamnt
atggccaagccactgcaggaataccagcgcaagcgcaacttcgacgccaccccggagccg
gccggcaaggcccgccgcggtgcgcgcgcgcaggcattgcagttctgcatccagaagcac
gacgccagccacctgcattacgactttcgcctggagctgaacggcaccctcaagagctgg
gccatccccaagggcccgtcactggacccgaaggtcaagcgcctggccgtccacgtcgaa
gaccacccgctggactacgccagcttcgagggcagcatccccgcaggccattacggtgcg
ggcgaagtgatcgtgtgggaccgcggcgtgtggctgcccgagggcgacccggcccaggcc
tatgccagcggcaagctgcgctttcgcctgcagggcgaaaagctgaacggcacctggcat
ctgtttcgcacccgccttggcggcaagaaggaacagtggatgctggtcaagtccgacgac
gaggctgcccgcgccgaggccgactacgacgtgctgcaggcccaacccgacagcgtgctc
agcgagcgcagcctgatcccccgcaccaagggcaagggcaaagacaaggacaagcccaag
gccgcacccccgcctcgccgcccagccagggccggcacactgagtgcggccaggaaggcc
accctgcccgccgccctcacgccgcaactggccaccctggtggaaaccccgccacaaggc
gactggcgctacgaggtcaagttcgacggctaccgcatcctggcgcgcatcgacggcgac
gacgtgcgcctgttcacccgcaacggccacgactggaccacgcgcatgccgctgcaggcc
aaggccctggccggcctggggctgagctcggcctggctcgatggcgaagtggtggtggcc
aacgccgagggtatcgccgacttccaggccctgcagaacgccttcgacagcgacaccgat
gccaacatcgtctactacctgttcgacctgccctacctcaatggcatggacctgcgccaa
tgcccgttgcaggagcggcgcgccgccctggcggccgtgcttgaaccggccgacgaacaa
cgcctgcgtttgagtgccgacttcgacgaagcccccgagtccctgctggccagctcctgc
cagatgcagatggagggcctgatcggcaaacgtgccgacagcctctatgtatcgcggcgc
agtcacaactggatcaagctcaagtgcaagcagcgccaggaattcgtgatcgtcggcttc
accgaacccaagggcagccgcgccgcgttcggcgccctgctgctgggggtgcacgacgcc
gacagcggccagctgcgctacgccggcaaggtcggcaccggcttcaataccgccaccctg
cagagcctgctccagcgcctcaccccgctcgaggtgaaaaagcccgcggtcgccaaccca
cccaccggcgccgaagcccgcggcgtgcactggctcaggccacagctgctggccgaggtg
gcctacgcccagatgacccgcgaaggggtggtacgccattcggtgttccatggcctgcgc
gaagacaagccggcccgcgccatcggcctggagaaacccgtgaaagcgcctacccgcaaa
gcctccgacaacaccctgcgcatcacccaccccgaccgggtgatcgatgccagcagcggc
accgacaaacgccaggtggccgagtactacgcccaggtcgccgaatggatcctgccgcac
ctcaagcgtcgccccgtggcgctggtgcgcgcaccggagggcctgagcggcgagctgttc
ttccagaagaacgccgcccagctgaacatcccgggcctggagagtcacgacaaggccgag
gccggccaggcagtgatgatcatcgaccgcgccgacaccctgctgggcgcggtacagatg
aacaccctggaactgcacacctggaacgccaccgccagggacttcgacaaacccgaccgt
ttcgtgctcgacctcgaccccgacccggcattgccctggaaggccatggtcgaagcgacc
cagctgaccctggcactgctcgacgaactgggcctgcaggcgtttctgaaaaccagtggc
ggcaagggcatgcacgtggtggtgccgctgacccggcgtgccggctgggacgaggtcaag
gcgttcagccatgccatcgtcacgcacatggccgggttgttccccgaccggctgtccgcc
gtttcggggccgaagaaccgcgtggggcgcatcttcatcgactacctgcgcaacgcccgt
ggcgccaccaccgtgtgcgcctattcgctgcgcgcccgcgaagggctgccggtgtcggta
ccgatccgccgcgaagagctcaccgaactcaagggcgccaaccagtggaacctgcacaac
ctgggcgagcgcctggccaatggcgacgacccctgggccgactacgacaagacccgccag
tcgctcaccgtggcgctgcgcaagcgcatgggcgtggcatga

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