Pseudomonas qingdaonensis: KH389_12295
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Entry
KH389_12295 CDS
T07622
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pqi
Pseudomonas qingdaonensis
Pathway
pqi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pqi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KH389_12295 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pqi03400
]
KH389_12295 (ligD)
Enzymes [BR:
pqi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KH389_12295 (ligD)
DNA repair and recombination proteins [BR:
pqi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KH389_12295 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
mRNA_cap_enzyme
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QVL21312
LinkDB
All DBs
Position
complement(2691945..2694446)
Genome browser
AA seq
833 aa
AA seq
DB search
MAKPLQEYQRKRNFDATPEPAGKARRGARAQALQFCIQKHDASHLHYDFRLELNGTLKSW
AIPKGPSLDPKVKRLAVHVEDHPLDYASFEGSIPAGHYGAGEVIVWDRGVWLPEGDPAQA
YASGKLRFRLQGEKLNGTWHLFRTRLGGKKEQWMLVKSDDEAARAEADYDVLQAQPDSVL
SERSLIPRTKGKGKDKDKPKAAPPPRRPARAGTLSAARKATLPAALTPQLATLVETPPQG
DWRYEVKFDGYRILARIDGDDVRLFTRNGHDWTTRMPLQAKALAGLGLSSAWLDGEVVVA
NAEGIADFQALQNAFDSDTDANIVYYLFDLPYLNGMDLRQCPLQERRAALAAVLEPADEQ
RLRLSADFDEAPESLLASSCQMQMEGLIGKRADSLYVSRRSHNWIKLKCKQRQEFVIVGF
TEPKGSRAAFGALLLGVHDADSGQLRYAGKVGTGFNTATLQSLLQRLTPLEVKKPAVANP
PTGAEARGVHWLRPQLLAEVAYAQMTREGVVRHSVFHGLREDKPARAIGLEKPVKAPTRK
ASDNTLRITHPDRVIDASSGTDKRQVAEYYAQVAEWILPHLKRRPVALVRAPEGLSGELF
FQKNAAQLNIPGLESHDKAEAGQAVMIIDRADTLLGAVQMNTLELHTWNATARDFDKPDR
FVLDLDPDPALPWKAMVEATQLTLALLDELGLQAFLKTSGGKGMHVVVPLTRRAGWDEVK
AFSHAIVTHMAGLFPDRLSAVSGPKNRVGRIFIDYLRNARGATTVCAYSLRAREGLPVSV
PIRREELTELKGANQWNLHNLGERLANGDDPWADYDKTRQSLTVALRKRMGVA
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atggccaagccactgcaggaataccagcgcaagcgcaacttcgacgccaccccggagccg
gccggcaaggcccgccgcggtgcgcgcgcgcaggcattgcagttctgcatccagaagcac
gacgccagccacctgcattacgactttcgcctggagctgaacggcaccctcaagagctgg
gccatccccaagggcccgtcactggacccgaaggtcaagcgcctggccgtccacgtcgaa
gaccacccgctggactacgccagcttcgagggcagcatccccgcaggccattacggtgcg
ggcgaagtgatcgtgtgggaccgcggcgtgtggctgcccgagggcgacccggcccaggcc
tatgccagcggcaagctgcgctttcgcctgcagggcgaaaagctgaacggcacctggcat
ctgtttcgcacccgccttggcggcaagaaggaacagtggatgctggtcaagtccgacgac
gaggctgcccgcgccgaggccgactacgacgtgctgcaggcccaacccgacagcgtgctc
agcgagcgcagcctgatcccccgcaccaagggcaagggcaaagacaaggacaagcccaag
gccgcacccccgcctcgccgcccagccagggccggcacactgagtgcggccaggaaggcc
accctgcccgccgccctcacgccgcaactggccaccctggtggaaaccccgccacaaggc
gactggcgctacgaggtcaagttcgacggctaccgcatcctggcgcgcatcgacggcgac
gacgtgcgcctgttcacccgcaacggccacgactggaccacgcgcatgccgctgcaggcc
aaggccctggccggcctggggctgagctcggcctggctcgatggcgaagtggtggtggcc
aacgccgagggtatcgccgacttccaggccctgcagaacgccttcgacagcgacaccgat
gccaacatcgtctactacctgttcgacctgccctacctcaatggcatggacctgcgccaa
tgcccgttgcaggagcggcgcgccgccctggcggccgtgcttgaaccggccgacgaacaa
cgcctgcgtttgagtgccgacttcgacgaagcccccgagtccctgctggccagctcctgc
cagatgcagatggagggcctgatcggcaaacgtgccgacagcctctatgtatcgcggcgc
agtcacaactggatcaagctcaagtgcaagcagcgccaggaattcgtgatcgtcggcttc
accgaacccaagggcagccgcgccgcgttcggcgccctgctgctgggggtgcacgacgcc
gacagcggccagctgcgctacgccggcaaggtcggcaccggcttcaataccgccaccctg
cagagcctgctccagcgcctcaccccgctcgaggtgaaaaagcccgcggtcgccaaccca
cccaccggcgccgaagcccgcggcgtgcactggctcaggccacagctgctggccgaggtg
gcctacgcccagatgacccgcgaaggggtggtacgccattcggtgttccatggcctgcgc
gaagacaagccggcccgcgccatcggcctggagaaacccgtgaaagcgcctacccgcaaa
gcctccgacaacaccctgcgcatcacccaccccgaccgggtgatcgatgccagcagcggc
accgacaaacgccaggtggccgagtactacgcccaggtcgccgaatggatcctgccgcac
ctcaagcgtcgccccgtggcgctggtgcgcgcaccggagggcctgagcggcgagctgttc
ttccagaagaacgccgcccagctgaacatcccgggcctggagagtcacgacaaggccgag
gccggccaggcagtgatgatcatcgaccgcgccgacaccctgctgggcgcggtacagatg
aacaccctggaactgcacacctggaacgccaccgccagggacttcgacaaacccgaccgt
ttcgtgctcgacctcgaccccgacccggcattgccctggaaggccatggtcgaagcgacc
cagctgaccctggcactgctcgacgaactgggcctgcaggcgtttctgaaaaccagtggc
ggcaagggcatgcacgtggtggtgccgctgacccggcgtgccggctgggacgaggtcaag
gcgttcagccatgccatcgtcacgcacatggccgggttgttccccgaccggctgtccgcc
gtttcggggccgaagaaccgcgtggggcgcatcttcatcgactacctgcgcaacgcccgt
ggcgccaccaccgtgtgcgcctattcgctgcgcgcccgcgaagggctgccggtgtcggta
ccgatccgccgcgaagagctcaccgaactcaagggcgccaaccagtggaacctgcacaac
ctgggcgagcgcctggccaatggcgacgacccctgggccgactacgacaagacccgccag
tcgctcaccgtggcgctgcgcaagcgcatgggcgtggcatga
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