Podarcis raffonei (Aeolian wall lizard): 128400981
Help
Entry
128400981 CDS
T09310
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Pathway
praf03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
128400981 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
praf03400
]
128400981 (LIG4)
Enzymes [BR:
praf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
128400981 (LIG4)
DNA repair and recombination proteins [BR:
praf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
128400981 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
LIG3_BRCT
DUF2087
RTT107_BRCT_5
Motif
Other DBs
NCBI-GeneID:
128400981
NCBI-ProteinID:
XP_053219742
LinkDB
All DBs
Position
1:complement(134744201..134747861)
Genome browser
AA seq
910 aa
AA seq
DB search
MSSISTSCSPSQLTVASQVPFEDLCSTLERIQKCKSRPEKTKNFKEFLDSWRKYHDALHK
NEKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKDGKDALKLLNYRTP
TGSRGDAGDFAMIAYFVLKQRCPRKGQLTIKQVNDILDSISNNNAAKRRDLVKKSLLQLI
TQSSALEQKWLIRMIIKDLKLGVSQQTLLSIFHPDASELHNVTTDLEKVCRQLHNPSVFL
SDVSITLFSPFKPMLAAIADIQQIEKQMNNQSFYIETKLDGERMQMHKDGDVYKYFSRNG
YDYTQQFGASPLEGSLTPFIHNIFNNNIQNCILDGEMMACNPTTQNFVQKGSKFDIKKMS
DDSELQTCFCVFDVLMVNNQKLGHEMLSKRYEKLNEMFTPIEGRLQFVPKNQANTQKEVI
DSLNEAIDNREEGIVVKDPMSIYKPDKRGEGWFKIKPEYVSEVMDELDLLIVGGYWGKGL
RGGMMSHFLCAVAETPLPGEKPSVFHSICRVGSGYTMKELYDLGLKLAKYWKPYRKRDPP
LSILCGTEKPEVYIEPCNSVIVQIKAAEIVSSDMYKTDYTLRFPRIERIREDKEWHDCMT
LDILEQLRGKACGKLATKHFHIDNDEPQGKKRKTVPKIKKKIGLIDHFKAPDLSNINQIS
SIFEDVEFCVMTGTQKYSKYQLESKIAEYGGSIVQNPGLDTYCVIAGIENVRVKNIIYSD
KYDVVRAEWLLQCFQSKTFVPWQLDFMIHMSPETKQHFACEYDCYGDSYTGDTDIAKLKK
VFSRMNNFQAEISQDAIADIEARYSWESSPLSMFRQHTIYVDPSDELSNSGARIKQTKLL
TALILRFHGAKVVQQLEEGVSHVISGDHAHLKEIKTLRRTFKRKFKILSEQWVKDSIKTG
KLQNENVYLI
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccatctctacttcctgttctccttcccaactaactgtggcatcacaagttcct
tttgaagatctctgttcaacattagaacgaatacaaaaatgcaaatcccgacctgagaaa
accaagaatttcaaggagtttttagattcctggaggaaatatcatgatgctcttcataaa
aatgaaaaagatgtaacagattctttttatccagcaatgaggcttattcttccacagttg
gaaagagaaaggatggcttatggaattaaagaaaccatgcttgctaagctgtatattgag
ctgttaaatttacccaaagatggaaaagatgctttaaaactcttaaattatcgaacacct
actggctcacggggagatgctggagactttgctatgattgcctattttgtcttgaaacaa
aggtgtcccaggaaaggtcaactgaccataaaacaagtgaacgatattttagattccatt
tctaataataatgctgccaaaaggagggatctggtcaagaagagccttcttcagttaata
actcagagttcagcacttgaacagaaatggttgatcaggatgatcataaaagatttgaaa
cttggtgtcagccagcaaaccttactttccatctttcatcctgatgcttcagagttgcac
aatgttacaactgatttggagaaagtctgtagacagttacacaatccttctgtatttctt
agtgatgtttctattacattattttctccctttaaaccgatgcttgctgctattgctgat
atacaacaaattgaaaaacaaatgaacaaccagagtttttacatagaaaccaaattagat
ggtgagcgaatgcagatgcacaaagatggagatgtttacaagtatttttcccgaaatggg
tatgattatactcagcagtttggagcttctcccttggaaggttcactgactccatttatt
cataatatcttcaacaataatattcagaactgcattctggatggtgaaatgatggcctgc
aatcccaccacacagaactttgtacagaagggtagcaaatttgacatcaaaaagatgtca
gatgattcagaattacagacatgcttctgtgtgtttgatgttctcatggttaataaccaa
aaattgggtcatgagatgttgagcaaaagatatgagaaactgaatgagatgtttacacca
atagaaggtcgtttgcagtttgttcctaaaaatcaagctaacactcagaaagaagtaata
gattctctaaatgaagcaatagataacagagaagaaggaattgtggtaaaagatcccatg
tcaatttacaagccggacaaacgtggggaaggatggttcaagatcaaaccagagtatgtt
agtgaagtaatggatgaactagatcttttaattgttgggggctactggggaaaaggtctt
cgtggtggcatgatgtcacattttttatgtgcagttgctgagactcctctgcctggtgaa
aaaccatcagtgttccactccatttgtcgtgttggttctggttacactatgaaagaactt
tatgatcttggcttgaaattagccaaatattggaaaccttatcgtaaaagagatcctcct
ttaagtatcttgtgtggaactgagaagcctgaagtctatatcgagccttgtaattcagtc
atcgtccagattaaagcagctgagattgtgagcagtgatatgtacaaaactgattataca
ttacgtttccctcgtattgagaggataagagaagataaagaatggcatgattgtatgact
cttgacattctagagcaactcagaggtaaagcttgtggaaagctagcgactaagcacttt
catatagataatgatgagccacaaggaaagaaacgtaaaactgtgcccaagattaaaaaa
aaaattggtttaatagatcattttaaagctcctgatctttcaaatataaaccagatttcc
agtatatttgaagatgttgagttttgtgttatgacagggacacaaaaatattcaaaatat
cagctggaaagtaaaatagcggaatatggcggcagcatagtccagaatcctggtttggac
acctattgtgtgattgcaggaattgagaatgtcagagtgaaaaatattatttattctgac
aagtatgatgttgtgagagcggagtggcttttacagtgctttcaatccaaaacatttgta
ccctggcagcttgatttcatgattcacatgtctccagaaacaaaacaacattttgcctgt
gaatatgactgctatggtgatagttacacaggtgatactgatattgccaaactaaagaag
gtgttctcaagaatgaataactttcaggcagagatctctcaggatgcaattgctgacata
gaagcacgttattcatgggaaagctctccactaagtatgttcaggcagcacacgatttac
gtggatccttctgatgaattgagtaattcaggtgctaggattaaacaaacaaaactatta
actgcgctgatacttcgatttcatggagcaaaagtggttcagcagcttgaagagggtgtg
tcccatgtaatcagtggagatcatgctcatttgaaggagataaagacactgagaagaacg
ttcaaaaggaagtttaaaattttgtctgagcagtgggtaaaggattctataaagactggc
aagttacaaaatgaaaatgtttacttaatttaa
DBGET
integrated database retrieval system
