Podarcis raffonei (Aeolian wall lizard): 128405887
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Entry
128405887 CDS
T09310
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Pathway
praf03013
Nucleocytoplasmic transport
praf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
128405887 (UPF1)
03015 mRNA surveillance pathway
128405887 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
praf03019
]
128405887 (UPF1)
Enzymes [BR:
praf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
128405887 (UPF1)
5.6.2.5 RNA 5'-3' helicase
128405887 (UPF1)
Messenger RNA biogenesis [BR:
praf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
128405887 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
128405887 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
128405887
NCBI-ProteinID:
XP_053228874
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All DBs
Position
18:1331822..1366983
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AA seq
1133 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGGGGSGGASAQ
GNPGGVSAGGGGAGGPPSVALSPGQLDAQVNGPDGILQNGAVDDNVPKTSQLLAELNFEE
DEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKE
VTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSS
QWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDE
EPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTL
PKTDSDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDSFEDYGDEIAIELRSSVGAPVE
VTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFT
AQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSN
IAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDET
GELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEP
ECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRM
HPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSY
LNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIA
SVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPL
WNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPG
SVYDRSSQGRPSNMYFQTHDQIGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGP
AAGRGNPKGKTSRGGRQKNRFGIPGAGQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQP
SQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGVTGLSQY
NT seq
3402 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagctcccagacgctgactttcctggacacggaggag
gccgagctgctgggcgccgacacgcagggctccgagttcgagttcaccgacttcacgctg
cccagccagacccagacgccgcccggaggaggaggaggaagcggcggggcctccgcgcag
ggcaaccccggaggagtctcggcaggaggaggaggagccggcgggccgccctccgtcgcc
ctctcgccggggcagctggacgcccaggtgaatgggcctgacggcatcctgcaaaatgga
gcagtggatgataatgtgcctaagaccagccaactccttgctgaactcaattttgaggaa
gacgaggaagacacttactacaccaaggaccttccagttcatgcttgcagctactgtggc
atccatgacccagcttgcgttgtctactgcaacaccagcaagaagtggttctgcaatggg
cgtgggaatacgtctggcagccatattgtgaaccaccttgtgagagccaaatgtaaggaa
gtgacactgcacaaggatggccctctgggtgagacggtcctggagtgctacaactgtggc
tgccgcaacgtgttcctcctgggtttcatccctgctaaggcagactctgtggtcgtcttg
ctgtgcaggcagccttgtgccagtcagagcagcttgaaggacatcaactgggacagttct
cagtggcagcctctgattcaagaccgctgcttcctttcctggctggtcaaaatcccttcc
gagcaggagcagctgagggcgcgtcagatcactgcccagcaaatcaacaagctggaagag
ctctggaaggagaacccctctgccaccctcgaagacttggagaagcctggcgttgacgaa
gagccacagcacgtcctcctccgatatgaggatgcttatcagtaccaaaacatatttggg
cctctggtcaaacttgaggccgactacgacaagaaactgaaggagtcccagacacaggac
aacatcactgtgagatgggatctgggcttgaacaagaaaaggattgcctacttcaccttg
ccaaagacggattcagatatgcgcctgatgcagggggatgagatctgcctgaggtacaaa
ggggatttggccccgctgtggaaaggaatcggccacgtgattaaagttcctgatagtttt
gaagattacggtgacgaaattgcgatcgagctgaggagcagtgtcggagcccccgtggaa
gtgacccacaacttccaagtggactttgtgtggaagtcgacttcctttgacaggatgcag
agtgccctcaagacttttgctgtggatgaaacctccgtctctggctacatctatcacaag
ctcctgggtcacgaggtggaggatgtcattatcaaatgtcagctgccgaagcgcttcaca
gcacaaggacttcctgacctcaaccattctcaggtgtatgctgtgaagactgtcctgcag
cgtcccttgagtctcatccagggccctcccggaacaggcaagactgtcacctcggccacc
attgtgtaccatctggccaggcaaggaaatgggcccgtgctggtttgtgccccgagcaac
atagccgtggaccagctgacggagaagatccaccagacggggctgaaggtggtgcgcctg
tgtgcaaagagtcgtgaggccattgactcccctgtctctttccttgccctgcacaaccag
atcaggaacatggatagcatgcctgagctccagaagctgcagcagctgaaagacgagact
ggggaactgtcctctgcagatgagaagcgctaccgggccctgaagcggacggcggagcgg
gagttgctcatgaatgcagatgtcatctgctgcacctgcgtgggagccggggacccaaga
ctggcgaagatgcagttccgctccatcttgattgacgagagcacccaggccacggagcca
gagtgcatggtgccagttgtcctcggggcaaagcaactgatcctggtgggcgaccactgc
cagcttggccctgttgtgatgtgcaagaaggcggcgaaagcaggcctctcccagtcgctc
tttgagcggctggtggtgctgggcatcaggcccatccgcctgcaggtgcagtaccgtatg
cacccagccctgagcgctttcccatccaacatcttttatgaggggtctctccagaacggt
gtcaccgcagcggaccgtgtgaagaagggatttgacttccagtggccccagccagacaag
cccatgtttttctatgtgacccaagggcaagaagagattgcaagttctgggacttcttac
ctgaacaggacggaggctgccaacgtggagaagatcaccaccaagctgctgaaggctggt
gcgaagccagatcagattggcatcatcaccccctacgagggccagcgctcctacctggtg
cagtatatgcagttcagcggctctctgcacaccaaactctaccaggaagtggaaatagcc
agcgttgacgctttccaagggcgcgagaaggacttcattatcctgtcctgtgttagagcc
aacgagcatcaaggcattggcttcctgaatgaccccaggcgcctcaatgtggctctcacc
agagcaaggtatggtgtcatcattgttgggaacccgaaagcgctttccaagcagcccctc
tggaaccacttgctgaactactacaaggagcagaaagtgctggtcgaggggcccctgaac
aacctccgtgagagcctcatgcagttcagcaagcctcggaagctggtcaataccatcaac
cctggagcccggttcatgacaactgccatgtatgatgcccgtgaagctatcatccctgga
tcggtgtatgatcgcagcagccaaggccggccctccaacatgtacttccaaacccacgac
cagatcgggatgatcagtgccgggcccagccacgtcaccgccatgaacatccccatcccc
ttcaacttggtgatgcctcccatgcctccccctggctattttggacaggccaatgggcct
gctgccggacgtgggaacccaaaaggcaagaccagccgtggtgggcgccagaaaaaccgc
tttgggatcccaggggccggtcagtcaaacctccccaacagccaggccagccaggacgtg
gtctcccagccgttctctcagggccctttgactcagggctacatctccatgagccagccg
tctcagatgagccagccaggcttgtcccagccagagctgtcgcaggatagttaccttggt
gacgagttcaaatctcagatcgacgtggccctgtcgcaggactctacttaccagggggaa
cgcgcatatcaacacggagtgacgggactgtcacaatattag
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