Pieris rapae (cabbage white): 110995525
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Entry
110995525 CDS
T05162
Name
(RefSeq) general transcription factor IIH subunit 4
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
prap
Pieris rapae (cabbage white)
Pathway
prap03022
Basal transcription factors
prap03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
prap00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
110995525
09124 Replication and repair
03420 Nucleotide excision repair
110995525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
prap03021
]
110995525
03400 DNA repair and recombination proteins [BR:
prap03400
]
110995525
Transcription machinery [BR:
prap03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
110995525
DNA repair and recombination proteins [BR:
prap03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
110995525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
110995525
NCBI-ProteinID:
XP_022118422
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Position
13:complement(8612502..8619145)
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AA seq
475 aa
AA seq
DB search
MSESSKSKSSNLNATPTLQCKDLHEYLKSRSSQFLETLYNYPTICLAVYRELPELARHFI
IRLLFVEQPVPQAVVASWVTQTHAKEQSKASEALSELSVWHEAPIPGGLPGWLLSQSFKK
NLKIALLGGGRPWSMSQTLEPDGKARDVAFLDAYALERWECVLHYMVGSQQTEGISADAV
RILLHAGLMTRDAEDGSAVITKAGFQFLLLSTAKQVWLFLQHYLHTAEKRNLSSAECLAY
LYQLSFSTLGKDYSTEGMSNNMLMFLQHLREFGLVYQRKRKAGRFYPTRLALNITCVRDG
IAPLEAKRSQGYIVVESNYRLYGYTQSTLQVALLGLFTELMYRFPNLVVGVITRESVRQA
FRGGISAQQIIKFLEQHAHPQMLCAESGGIRTSSLLPPTVVDQIRLWESERNRFTYTEGV
VYNQFLSQADFVVLRDYARTQGVLSWQNERTRTMVVTRPGHDDVKKFWKRYSKSS
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaatcctcaaaatcgaaatcttctaacttaaatgctacacctaccttgcaatgt
aaagatctacacgagtatcttaaaagtcggtcttctcagtttttggagactctatacaat
taccctacaatttgtttagcagtgtatagagaattgccagaactggctcgacactttata
attcgccttctttttgtcgaacagccagtcccacaagcagttgttgcatcgtgggtcaca
caaacacatgctaaggaacaaagcaaagcttctgaggcattatcagaactgtcagtatgg
catgaggcacctatacctggaggcttaccgggatggttattatcacagtcatttaagaaa
aatttaaaaattgctcttttgggtggtggccgcccatggagtatgtctcaaaccttggaa
ccagatggcaaagccagggatgtagcattcttagatgcctatgcacttgagcgatgggaa
tgtgttcttcattacatggttggcagtcagcaaacagaaggaattagtgctgatgctgta
aggatattgcttcatgccggactcatgactagagatgcggaggatggctcagcggttata
accaaagctggctttcagttccttttgctcagtacggctaaacaagtatggttattcctt
caacattatctacatactgcggagaagaggaatctgagttcagcggaatgtttagcttat
ctataccaactcagttttagtactcttggaaaggattatagtacagaaggcatgagcaac
aatatgctaatgtttttacagcatttgagggagtttggactcgtctatcagagaaagcga
aaagcgggtcgcttttaccccacgcgtctggcgctgaatataacctgtgttcgagatggt
atagcgccgttggaagccaaaaggtcccaagggtatatagtcgttgagagtaattatcga
ctttacggctatacgcagagcacattgcaagtcgcactattgggactcttcaccgagcta
atgtataggttccctaatttggtggtcggagtgataactcgtgaatcagtgcgtcaggcg
tttcgaggtggaatctctgcgcaacagatcatcaagtttctggagcagcatgcacatcca
cagatgctgtgtgctgaatctggtggtatccggacatcgtcgcttctcccgccaacagtc
gtggatcaaataagactttgggagagtgagaggaaccgcttcacgtacaccgagggagtg
gtctacaaccagttcttatcacaggctgatttcgtagtattacgagattatgcgcgtacg
cagggcgtactaagttggcagaacgagcgcactcgtactatggttgtgacaagaccggga
cacgatgacgtcaagaagttctggaaacgctactccaagtcctcatag
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