Pieris rapae (cabbage white): 111002124
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Entry
111002124 CDS
T05162
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
prap
Pieris rapae (cabbage white)
Pathway
prap03013
Nucleocytoplasmic transport
prap03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
prap00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111002124
09122 Translation
03013 Nucleocytoplasmic transport
111002124
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prap03019
]
111002124
03041 Spliceosome [BR:
prap03041
]
111002124
Messenger RNA biogenesis [BR:
prap03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
111002124
Spliceosome [BR:
prap03041
]
Complex C
Other components
EJC/TREX
111002124
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
111002124
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
Motif
Other DBs
NCBI-GeneID:
111002124
NCBI-ProteinID:
XP_022127927
LinkDB
All DBs
Position
4:9288146..9294564
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AA seq
663 aa
AA seq
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MSEKSSFDELRVKYKDVLSKAFSTNNIDLLDSFSKKANESDRKVAMDQAFRDKLLDLLTE
ASSILENYVNFCIESCRRQMITPTMPVVLLGDIFDALTLNKCEELFTYVENGVNIWREDL
FFVACKNNLLRMCNDLLRRLSRSQNTVFCGRILLFLAKFFPFSERSGLNIVSEFNLENVT
EFGGDISGTLKDVLDEEMVIDDDKNKLNIDYNLYCRFWSLQEFFRSPNTCYNKIQWKTFV
AHSGSVLSAFSSYKLEAIELQKSKLNRLKPVNDVEMEESKEQHYFAKFLTNQKLLELQLS
DANFRRCVLIQFLILFQYLTTTVKFKLESQELKSDQSEWVKDTTNLVYKLLGETPPDGKG
FVECVKSILKREEHWNNWKNDGCPEFQKPKPAVQTESIDEVRRVKKRRRPVGDVIKEYET
QSKHFMGNNELTKLWNQCPDNLAACRTKERDFMPSLEYMLSGGTNSGSGGGWGWRALRLL
ARRSPHFFVHTNNPIGRLSDYLDDMVKRISREVAASATANTANGDPSAVEDKKPELQEEE
MTEEQIETDLIKDGDTDIEQVPDSTDANDEDKPTRTSLTMITDSQLDVLAANLPAWKKLA
AKLGYKPDEIEFFETENATDEARAKNMLKLWFDDDEDASVENLLYIMEGLDLVDACEALR
NAK
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaaaaagtagttttgatgaattacgtgttaaatataaggatgtcctgtctaaa
gcgttttcaacaaataacatcgaccttcttgattcattctcaaagaaggcaaacgaaagc
gatcgaaaagtggctatggaccaagcgttcagagataaacttttagatctacttactgaa
gcctcgagtatactagaaaactacgtgaatttctgtattgaatcatgtagaagacaaatg
atcactccaacgatgcctgttgtacttcttggagatatatttgatgccttaactctcaat
aaatgcgaagaactgttcacatacgttgaaaatggtgtaaacatttggcgagaagaccta
ttttttgttgcatgcaaaaataatttactgagaatgtgcaatgatctattacgtcgatta
tctagatctcaaaacactgtattttgtggaagaattttgttatttttggcaaaatttttc
ccattttctgagagatcagggttgaatatagtttctgaatttaatttagaaaatgtaact
gagtttggtggagatatttctggtacactcaaggatgtattagacgaagaaatggttata
gatgatgataagaacaaattaaatattgattataacctgtactgccgattttggagttta
caggagttcttccgaagcccaaacacatgctataacaaaatccagtggaaaacatttgtt
gcacattccggaagtgtgctgtcagcattttcttcatataaattagaagcaatagaactt
cagaagtccaagttaaatagactgaagccagtaaatgatgttgaaatggaagaaagtaaa
gagcagcattactttgccaaatttctaactaaccagaagcttctagaactccaactatca
gacgcaaactttagaagatgtgtactcatacaatttttaattttattccaatatttaaca
acaacagtgaagtttaaacttgaatctcaagaactgaaatcagatcagtcagaatgggtt
aaggatacaactaatctagtttataaattacttggcgagactccaccagatggaaaggga
tttgttgaatgtgtcaaaagtatattaaagcgagaagagcactggaacaattggaaaaat
gatggttgtccagagttccaaaaaccaaagccggcagtacaaactgaatcaatcgatgaa
gtaaggcgtgtaaagaaacgtcggcgacccgttggggatgttatcaaagaatatgaaaca
caaagcaaacattttatgggaaacaatgaattgacaaaattgtggaatcaatgtccggac
aatcttgccgcatgtcgtactaaagagagagattttatgccttctttggagtatatgtta
tctggtggaacaaacagtggtagtggtggtgggtggggctggcgagctttgaggctatta
gctcggagatcgccgcatttcttcgtacatacaaataatcctattggacggctatccgac
tatttggatgatatggtaaaacgtatctcacgtgaagttgcagcgagtgcaactgctaac
acggctaatggagatccatctgctgtcgaagataagaaaccggaattgcaagaagaagaa
atgactgaagagcaaattgaaacagatcttataaaggatggagacactgatatagaacag
gtgccagattcaacagatgcaaatgacgaagacaaaccaactagaacaagtctcacaatg
ataaccgactctcaattagacgtattagctgcaaacctccctgcctggaagaaattagct
gcaaaacttggctacaaacccgacgaaatagagttctttgagacagagaacgcgacagat
gaagcaagagccaaaaatatgcttaaactgtggtttgatgatgatgaagatgcatctgtt
gagaatttactctatattatggagggtttggatttggttgacgcttgcgaagcgttgaga
aacgctaaatga
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