Pieris rapae (cabbage white): 111003841
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Entry
111003841 CDS
T05162
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
prap
Pieris rapae (cabbage white)
Pathway
prap03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
prap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
111003841
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
prap03400
]
111003841
Enzymes [BR:
prap01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
111003841
DNA repair and recombination proteins [BR:
prap03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
111003841
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
BRCT
RNA_ligase
DNA_ligase_IV
SKA1
Alba
DNA_pol3_theta
Motif
Other DBs
NCBI-GeneID:
111003841
NCBI-ProteinID:
XP_022130254
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All DBs
Position
1:8166429..8179327
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AA seq
882 aa
AA seq
DB search
MLIPANNVLFGDFCAILDCLNKKKKNRHEQDRILINFVNEFRINSGKLISNKNATFFPIL
RLLLPDKDRERNPYNLKETKLGALLVKVLSLNKRSHDAQELLNFRSVQNNFHDSDFAGIA
FLVLKNRIPQKIGHLTIGDVNALLDKIASIVENKAHILDEAFSYAIKKLTAEQLKWFLRI
ILKDLKLGMSGHRILAAFHPDAPELYESCSNLNKVCEDLGDGDTRPIELGVQVFFAVSPM
LSERLDVTRIAQLLASDKLYQVEDKFDGERFQMHMENGIFEYFSRKGFKYSNNYGKTYDS
NGLLTPLLKECFIPSASSFIIDGEMMGWHKEYQCFGSKGMAFDVKKITENARFRPCFCVF
DILYYNGMTLIGPADKGGKTLKERLEILDSLFMDIPGVIMHSKRQIVKDSVDVLNALNKA
IENQDEGIVVKDFNSYYIANRRNVGWYKVKPEYTEGTMTDLDLVVIGADEAENKRQGRAK
SFHVACLDRSGEEQRWVSVGLVASGLTFEEREQLCVLLEQHWKPAKKVPPPSSLYFNKLK
PDFWIMPEVSIVLEVRATELVRSSSSGTDYTLRFPRVMKIRRDKPVKDVLTLEEFQKLVA
ERNAVVKLSTKRISENQIDEVVIKARKTRTQKIIQVAEKFRTKPIDGVNVVSKALDGREI
CILSDDEDFKKIDLIKIVESHGGKHVENPGPKTWCCVVGTLTFRVRKLIETEKFDIISTS
WLRSLPESEEPCSLSPLDMLSIKHLTRIKLSLDYDEFGDNYRDQINEETLKKCLKKMDNS
DPIYLTASEMLYIDEQLFGEHNPFSFLRKCTLHFVEYSIHSTLAKMYGATICVINENPTH
IVIRRGKRYELGHLSSKIVYEDWLDNCFKEKKFITESEFIFK
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atgttaataccagcaaacaatgttttatttggtgatttttgtgcaatcttagattgtcta
aataaaaagaagaaaaacaggcatgagcaagatagaattttgatcaattttgtaaacgaa
tttcgaataaattcggggaaacttataagcaataagaatgcaacattctttcccatatta
agattgttgttgccggataaagatcgtgagagaaatccgtacaatttaaaggaaacaaag
ctcggtgctcttttagtaaaagttttatcactcaataaacggtcacatgatgctcaagaa
ctgcttaatttccgctcagtccaaaacaatttccatgatagtgattttgctggaattgcc
tttttagtcttaaagaacagaatacctcaaaaaataggacatctcacaataggtgacgtt
aacgcactacttgataaaatagcatcaattgttgaaaataaggcacatattttagacgag
gctttcagctatgcaataaaaaaattaacagcagaacaactgaaatggttcctaaggata
atactgaaggacttaaaactaggtatgagtggacaccgaatcttggcagcatttcatccg
gacgcaccggaattgtatgaaagctgcagtaatttgaacaaagtatgtgaagatcttgga
gatggtgacactcggccgatagagctaggcgtgcaagtttttttcgcagttagccccatg
ctctccgagaggttggatgtcactcgcattgcgcaattattggcttcagacaagttatat
caagttgaggataagtttgatggcgaacggtttcagatgcatatggaaaatggaatattt
gagtatttttctagaaaagggttcaagtattctaataactacggtaaaacatatgattca
aacggattattgactccccttttaaaagaatgcttcataccaagtgcttcaagtttcata
attgatggagaaatgatgggttggcataaagagtatcaatgttttggttccaaaggaatg
gcgtttgatgtaaagaaaataactgagaacgcgagattccgaccatgcttctgcgtgttt
gacattctttattacaatggcatgacattgattggtccggctgacaagggcggtaaaact
ttgaaagaaagactagagattcttgattctctgtttatggatataccgggtgttataatg
catagtaaaagacagattgtcaaagatagcgttgatgtgcttaatgctttgaacaaagcg
atagaaaaccaagacgaaggtatcgttgtaaaggacttcaattcatattatatagccaat
cgtaggaatgtaggctggtataaagttaaacccgagtacacggaaggaacaatgacagat
ttagacctagttgttattggagcggatgaagcagagaacaagaggcaaggtcgcgccaag
agctttcacgtcgcttgtttagatcgctccggagaggagcagcggtgggtatcagtgggc
cttgtagcctcgggattgacgtttgaagagcgagagcaactctgtgtgcttttagaacaa
cattggaaacccgccaaaaaagtacctccaccttcctcgttgtactttaataaacttaaa
ccggatttctggatcatgcccgaagtttccattgtattagaggtaagagcgacggaacta
gttcgcagcagtagttcaggcacagattatacattgcgtttccctcgggtcatgaaaatc
cgcagggacaaacccgtgaaggacgttcttactttagaggagttccagaaacttgtagcg
gagagaaatgcagttgtaaaattaagtacgaagagaataagtgaaaatcagattgacgaa
gtcgtaattaaagcacgtaaaacgcgaacacaaaaaattatacaagttgctgaaaagttt
cgcactaaaccaattgatggcgttaatgtcgtttcaaaagcgttagatggcagggaaata
tgcattctctctgatgacgaggattttaagaagatcgatctgattaaaattgtggagtcg
cacggtggaaagcatgttgaaaatccgggtccaaaaacttggtgttgtgttgtaggaaca
ttaacatttcgggttcggaaattaatagaaactgaaaaattcgatataattagtacatcg
tggttgcgatctcttcctgaatccgaagaaccatgttccctctcaccattagacatgttg
tcaatcaaacatttaactagaataaagcttagtcttgattatgatgaatttggagacaac
tatagagaccaaataaatgaagaaacgttgaagaaatgtttgaagaaaatggacaattcg
gatccaatatatcttacagcgtctgaaatgttatacattgacgaacagttatttggcgaa
cataacccgttctcgttcttacggaaatgtacattacattttgtcgaatattcaatacat
tctacattagcaaaaatgtatggcgcaacaatttgtgttattaacgagaatcctactcat
atcgtaatccgtagaggaaaaagatatgaattgggtcacctttcttcaaaaattgtttat
gaggactggctggataattgctttaaagaaaagaaatttattactgaaagcgaattcata
ttcaagtag
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