Pandoraea pnomenusa: X636_04805
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Entry
X636_04805 CDS
T02950
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
prb
Pandoraea pnomenusa
Pathway
prb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
prb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
X636_04805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
prb03400
]
X636_04805
Enzymes [BR:
prb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
X636_04805
DNA repair and recombination proteins [BR:
prb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
X636_04805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AHB74827
LinkDB
All DBs
Position
complement(4132541..4136428)
Genome browser
AA seq
1295 aa
AA seq
DB search
MTQLIDLDVFGCDLDGVCLIEASAGTGKTWNICALYVRLLLEKQLTVEQILVVTFTNAAT
AELRERIRARLAGLVAAMAPVFDEASNDWHDEDVDEGEGFSDFDPDASDDPLFSVMIAGL
IERGEMTPKAVRDCLQTALRGFDQASIHTIHGFCQRALAEVPFAAGLPFAYELVPDDNGV
RHDLAVDYWRRVVEPLAAQDDGFAAWLVDRKRSPGTLTDQLARRLKKPMSALRWPPAVDA
APPSPDDALLATYRAARECWEAQAAVIADLMRAALPSYKKNIYHEGSLSQAVAAWRRYLS
AGDVGAPLGQKAELLTSARLAKDIKKGETPPDHRFFDMADVLVRARADADERYAMQWLRI
LRDWLAQAPEQLALRKRELRVVSFDDLLGNIARALMQHPELADALRERYPCALIDEFQDT
DPLQFAIFSAVYGNGGHGGHDGHSGHRGQRTPTSPAQGRGPMFMVGDPKQAIYSFRAADL
HTYLSARQNADAAYTLAVNQRSTPAIIDAGNRLFGANDRAFVLEGLEYPPVRPGARRRPP
LTDVRDVADFTVWWLPDDDEPLSKDDALQACAKATAAEVARLLAGASRGDVLVGERPLAP
GDIAVIVQTHRQGALMKARLAEHAVGSVELTQDSVFASEEAETLLRVLRAVESPGDVRAL
RSALATELFGLDATALYRMQTSEASDAEAIAWIERLQRYRQLWADRGFSAMWRTLMRELG
LAARLVAQSGGERRLTNFMHLAELAQARWAEQPGMPALLRWLASQRNAGGGEEAQLRLES
DQNLVQIVTVHKSKGLEYGVVFCPFLWDGAVRDGGGLDGLEYHDGPTAVIDFTDAAGKGS
PAAAALRQEQSAEQARLLYVALTRAVYRCYLAAGIYSSRRSVKESCGGMLNWLAAGQGIA
FDAWIASTIDTDERVQTIRAAWKSLIGGPLDVVPLPIGDALDAATRVAPPMAPELATRTS
TRALREAWRIGSFSGLLAGMHAGPQLGGGQLSAPERTRPDYDAQANAGPTFALPPEGDDV
WPPSDDILRFPRGPAAGESLHRVFELADFQSRAQWPHAVSRALRERPPGRGAESNDTWRA
MMMNMLADTLATSLRPGMQLADVSLAERLTEMEFTYPADAVPLEALRGLLRQFGYPDLPL
DATVLRGYLKGFIDLVFRHGGQWWILDWKSNYLGTAPENYGSEGLREAMAEHGYHLQYLL
YTLALHRYLRRRLPDYDYDRDMGGSLYLFVRGVRPDWANAHLAGDDVPGVFFDKPSLDMV
NALDRLFAAGDNAALAQALALDAPPAPLTADGEDA
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
atgacgcaactcatcgacctcgacgtgttcggctgcgatctggacggcgtctgcctgatc
gaagcgtcggccggcaccggcaagacgtggaacatttgtgcgctgtacgttcggctgttg
ctcgagaaacaactgacagtcgagcagattctcgtcgtgacgttcaccaatgccgcgacc
gccgaactgcgcgagcggattcgcgcacgcctggccggactggtggccgccatggcaccg
gtgttcgatgaggcatcgaacgactggcatgacgaggacgtggatgagggggaggggttc
tccgatttcgatcccgacgccagcgacgacccgttgttcagcgtgatgatcgccgggctg
atcgagcgcggcgagatgacgccgaaagccgttcgcgactgtcttcagaccgcattgcgc
gggttcgaccaggcgtcgattcatacgattcatggattctgtcagcgggcgttggcggaa
gtcccgttcgcggccgggctgccgttcgcctacgagttggtgccggacgacaacggtgtg
cgccacgatctggctgtcgattactggcgacgggtggtcgagccgctcgcggcgcaggac
gatggcttcgcggcttggctcgtcgatcgcaaacgctcgccgggcacgctcaccgaccag
ttggcgcgccgcctgaagaagccgatgtcggcgttgcgttggccgcctgccgtcgacgcc
gccccgccatcgcccgacgacgccctgctcgcgacctaccgggccgcgcgcgaatgctgg
gaggcgcaagccgcggtcatcgccgacctgatgcgcgccgcgctgccgtcgtacaaaaag
aacatctatcacgaaggatcgctctcccaggcggttgccgcgtggcgccgttacctgtcg
gcaggcgacgtcggcgcgccgctcgggcagaaggccgaactgctcacgagcgcacgtctg
gccaaggacatcaagaagggggagacgccgcccgatcatcggttcttcgacatggcggat
gtgctggttcgtgcgcgcgccgacgccgacgaacgctacgccatgcaatggctgcgaatc
ctgcgcgactggctggcgcaggcgcccgagcaactggcgcttcgcaagcgcgagttgcga
gtggtgtcgttcgacgacctgctcggcaacatcgcacgtgcactcatgcagcatccagag
ttggccgatgccctgcgagagcgctatccctgcgcgctgatcgacgagtttcaggacacc
gatccgttgcagttcgccatcttcagcgcggtttacggaaacggtggacacggcggacac
gatggacacagcgggcaccgtggacagcgcacgcccacctcgcccgcgcaggggcgtgga
ccgatgttcatggtgggcgacccgaagcaggccatctacagtttccgcgcggccgatctg
cacacttatctgtccgcgcgccagaacgccgatgccgcctatacgctggcggtcaatcag
cgttcgacgccggccatcatcgacgccggcaaccgcctgttcggcgccaacgaccgggcg
ttcgtgctcgaagggctcgaatatccgccggtacgtccgggcgcgcggcgtcgtcctccg
ctcaccgacgtgcgggacgtcgccgacttcacggtctggtggctgcccgacgatgacgag
ccgctgtcgaaggacgacgcgttgcaagcctgcgcgaaggccaccgctgccgaggtggcg
cgcttgctggccggtgcctcgcgcggggacgtcctcgtcggcgagcgccctctcgcgccg
ggcgatattgccgtgatcgtccagacgcaccgccagggggcgctgatgaaggcgcgcctt
gccgaacacgccgtgggtagcgtggaactcacgcaggattccgtattcgcgagcgaagag
gcggaaaccctgttgcgggtgttgcgagcggtggagtcgccgggcgatgttcgtgcgctg
cgctcggcgctggcgacggaactgttcggtctcgacgccaccgcgttgtatcgcatgcag
acgagcgaggcgtccgacgccgaagccattgcgtggatcgagcgacttcagcggtatcgt
cagttatgggcggaccggggcttctcagcgatgtggcgcacgctcatgcgcgaacttgga
ctggcggcgcgcctggtggcgcagtccggcggcgagcgacggctgaccaatttcatgcac
ctggccgagctggcgcaggcgcgctgggccgagcagccgggcatgccggcgttgctgcgc
tggctggcctcgcagcgcaacgccggcggtggcgaggaggcccagttgcgtctcgagtcg
gaccagaacctggtgcagatcgtgaccgtgcacaaatcgaaaggcctggaatacggcgtg
gtgttctgcccgttcctgtgggacggcgcggtgcgcgacggcggtggtctcgacgggctc
gagtatcacgacggaccgacggcagtgatcgatttcaccgacgccgcgggcaagggctca
ccggccgccgccgcgctgcggcaggagcaatcggcggagcaggcgaggctgctttacgtt
gcgttgacacgcgccgtctaccgctgctatctggccgccggcatttactcgtcccggcgc
agcgtgaaggaatcgtgcggcggcatgctcaactggctcgcggccgggcaggggattgcg
ttcgacgcgtggatcgcatcgacgatcgatacggacgaacgggtgcaaaccatccgggcc
gcatggaagtccctgatcggtggcccgctcgatgtggtgccgttgcccatcggcgatgcg
ctcgacgcggccacgcgtgtcgcacctccgatggcccccgaactcgccacgcgcaccagc
acacgcgcattgcgcgaagcgtggcgcatcggcagcttctcgggcctgctggccgggatg
cacgccgggccgcaattggggggcggtcaactcagcgcgcccgaacgcacgcgtcccgac
tacgacgcgcaggccaacgcggggccgacatttgccttgcccccggaaggcgacgacgtc
tggccgccgtccgatgacattcttcgctttccgcgcggccctgcggccggcgagagcctg
caccgggtattcgaactggcggatttccagtcgcgtgcgcagtggcctcacgccgtatcg
cgtgcactgcgggagcgtccaccgggacgaggtgccgagagcaacgacacctggcgcgcc
atgatgatgaacatgctcgccgacacgctcgccacgtcactgcgccccggcatgcagctc
gccgacgtgtcgctggccgagcgactcaccgaaatggaattcacctatccggccgatgcc
gtcccgctcgaagcgctgcgaggtttgcttcgacagttcggctatccggacctgccactc
gacgccacggtactgcgcggctatctcaaagggttcatcgacctggtgtttcgccatggc
gggcagtggtggattctcgactggaagtcgaactacctcggcaccgccccggaaaactac
ggttccgagggcttgcgcgaggcgatggccgagcatggctaccatttgcagtatctgctc
tacacactggcgttgcatcgctatctgcggcgccgtttgcccgattacgactacgaccgc
gacatgggcggaagcctctacctctttgttcggggcgtgcgccccgactgggccaacgcc
catctggccggtgacgatgtccccggcgtcttcttcgacaagccgtcgctcgacatggtg
aacgcgctggatcgtctgttcgctgcaggggacaacgccgcgctggcgcaggcgctggcg
ctggacgcgccaccggccccgctgacggccgatggggaggacgcatga
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