Pandoraea pnomenusa: X636_13680
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Entry
X636_13680 CDS
T02950
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
prb
Pandoraea pnomenusa
Pathway
prb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
prb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
X636_13680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
prb03400
]
X636_13680
Enzymes [BR:
prb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
X636_13680
DNA repair and recombination proteins [BR:
prb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
X636_13680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AHB76372
LinkDB
All DBs
Position
complement(655336..657870)
Genome browser
AA seq
844 aa
AA seq
DB search
MAAYDARRNFAATPEPRGERAAQGRAMRYVIQRHDASHLHYDFRLELDGTLKSWALPKQP
GPDVSRPRLAVQVEDHPLAYADFSGDIPPGNYGAGHVDIWDSGTWEPHGDARRDYEDGKL
SFTLHGERLDGDWTLVRTTKPARQPQWLLIHRRDGTRHATTLQASTPAATQTRSAAARTE
AKTTTRTRTRKTSRQSSQSPPTTLSPMLATLVDAAPPSAGWHAEIKLDGYRVLIRIDGDD
VRVFTRSGQDWTHRFRPACDALRKCALPNAWLDGEAVVVGAHGLPDFQALQRAFDANAQD
AILIYVFDMPWCNGDDMRDMPLRERQAALAAIFEGGETDAVRVLQPVSGELESLWHSACE
AGLEGIMVKRDDSPYVAGRSDAWRKLKCSQRQEFVVLGFTEPSGTRQGFGALLLGYYDDD
GKTLRYAGKVGTGFDTDALLRLRKRFDAVRSPRAPLSPAPKPAGAARVRWLEPTLVAEVR
FAEWTRDGNVRQASFVAMRDDKPAKDIRREARMRGTVNALAPSRQRGRPDKETSPMPRSA
KSNAEPPSLPVKITHGDRVMDTHSEVTKAELAAYYHAVAPWMLAHLAGRPVAVLRAPEGI
GGEMFFQKHAAKTMPGVHTLDPSLDPDHAALMQIDDVRGLVGAVQMGAVEFHTWNARSDL
IERPDRVIFDLDPGKGLDFAAVVEGARLIRGLLDELGLTAFVKTSGGRGLHIVTPLARRH
EWDVAKAFAEAVARHMARIFPDRFTATMGPKHRVGKCFIDYLRNYRGATTVCAYSSRARE
GMAVSMPVRWEDLTALPGADAWNVRNAVEHVSSLRQDPWEGYDKAAQQRLTKEILTRLTR
ATAR
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
ttggccgcctacgatgccaggcgcaatttcgcggcgacgccagaaccgcgcggcgagcgc
gccgcgcaaggacgcgcgatgcggtatgtcatccagcgccatgacgccagtcatctgcac
tacgacttccggctcgaactcgacggcacgctgaagtcgtgggcgctgccgaagcagccc
ggccccgacgtcagccgcccgcgactggccgttcaggtggaggatcatccgttggcatac
gcggatttttcaggcgacattccaccgggaaactacggtgccgggcacgtcgacatctgg
gacagcggcacgtgggagccgcacggcgacgcgcggcgcgactatgaggacggcaagctg
tcgttcaccttgcacggcgagcgtctcgacggagactggacgctcgttcgcaccacgaag
ccggcgcgtcaaccgcaatggctgctgatccaccggcgcgatggcacacgccacgccacc
acgcttcaggcgtcgacacccgccgccacgcaaacgcggtccgctgctgcgagaaccgaa
gcaaaaaccacaacccgaacgcgaacgcgcaagacttctcgtcaatcgtcccaaagcccg
ccgacgacactcagcccgatgctcgccaccctcgtcgacgcagcgccgccgtccgctggc
tggcatgccgagatcaagctcgacggttaccgcgtgctgatccgcatcgacggcgacgac
gtgcgcgtattcacgcgctcggggcaggactggacgcatcgttttcgtcccgcgtgcgac
gcgctgcgcaaatgcgccctgcccaacgcgtggctcgatggcgaagccgtggtcgtcggc
gcgcacggtctacccgatttccaggcgttgcaacgcgccttcgatgcgaacgcgcaggac
gccatcctgatctacgtcttcgatatgccgtggtgcaatggcgacgacatgcgcgacatg
ccgttgcgcgaacgacaggccgcgctcgcggcgatattcgaaggtggggaaaccgacgcc
gtgcgcgtgctgcaaccggtgagcggcgaactcgaatcgctgtggcatagcgcgtgcgag
gccggactggaaggcatcatggtcaagcgcgacgattcgccttacgtcgcgggacgcagc
gatgcgtggcgcaagctcaagtgctcgcagcgtcaggagttcgtcgtgctcggtttcacc
gaaccgtccggcacgcggcaaggcttcggtgcgttgttgctggggtattacgatgacgac
ggcaagacgctgcgctacgcgggcaaggtcggcacgggcttcgacaccgatgccttgctg
cgcctgcgcaagcgattcgatgccgtgcgatcgccgcgcgcgccgttgtcgcccgcgccg
aagcctgccggcgccgcacgcgtgcgctggctcgaacccacgctcgtggccgaggtgcgc
ttcgccgagtggacccgcgacggcaacgtgcgccaggcgtcgttcgtggcgatgcgcgac
gacaagcccgcgaaggacattcgccgcgaggcgcgcatgcgtggaaccgtcaacgcgctc
gcgccatcccgccaacgtggtcgccccgacaaggagacatcgccaatgccgcgcagtgcg
aaatcgaacgcagaacccccttcgttgcccgtgaagatcacccacggcgatcgggtgatg
gatacccactccgaggtcaccaaggcggaacttgccgcgtactaccacgccgtggccccc
tggatgcttgcgcatctggccgggcgcccggtggcggtactgcgtgcgccggagggtatc
ggcggcgagatgttcttccagaagcacgcagcaaagacgatgcccggcgtgcacacgctc
gatccctcgctcgatcccgatcatgcggcgctcatgcagatcgacgacgtgcggggcctt
gtcggcgcggtgcagatgggcgccgtcgagtttcacacatggaatgcacgcagcgatctg
atcgagcgtcccgatcgcgtcatcttcgacctggaccccggcaaaggcctggatttcgcg
gccgtcgtcgaaggcgcacggctgattcgcggattgctcgacgagttgggcctgaccgcc
ttcgtgaaaaccagcgggggacgcggtcttcacatcgtgacaccgctggcacgccgtcat
gagtgggacgtcgccaaggccttcgcagaggcagtggcccggcacatggcgcgcatattt
ccggatcgcttcacggcaacgatggggccgaagcatcgcgtggggaaatgcttcatcgac
tatctgcgcaattaccgcggcgcgacgaccgtgtgcgcctattcgtcgcgggcgcgcgaa
ggcatggcggtatcgatgccggttcgctgggaggatctgaccgcattgcccggcgccgat
gcatggaatgtgcgcaacgccgtggaacacgtctcctccctgaggcaagacccctgggag
ggctatgacaaggccgcgcagcagcggttgaccaaggaaatattgacccggctgacgcgg
gcgacggcgcgctag
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