Prochlorococcus sp. MIT 0604: EW14_1063
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Entry
EW14_1063 CDS
T03304
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
prc
Prochlorococcus sp. MIT 0604
Pathway
prc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
prc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EW14_1063
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
prc03400
]
EW14_1063
Enzymes [BR:
prc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EW14_1063
DNA repair and recombination proteins [BR:
prc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EW14_1063
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
ResIII
UB2H
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AIQ95081
UniProt:
A0A089P4D6
LinkDB
All DBs
Position
911041..914553
Genome browser
AA seq
1170 aa
AA seq
DB search
MSLNTLVDYISNSQITSELIKRISKNNELNFVGSSRYAKSIILDSIAKKEGKNILLISPN
VEIAYKWIGYFESINDKAVLYYPPTEHLPYSSINKSKEIEFSQLTVLSKLIKKKKNELNI
VISTERSLQPHLINKKLLIENKLNLQKGVQIEIQELANKLTLLGYTKDNVTSTEGFWSRR
GEIIDIYPVNNEFPIRLEFFDNVIEKIREYDPNTQKTLESINNIEIIQAGFDLLIKDKLN
NFSKNGIFNSEDINKNNLDRYLGIIEKQPSNIIDFIDRETILVIDELEDCTKFANNWYLD
SESNFYNCEYELNENLKNNDINLEVKPNLHLKFDEILNSLGNFNLIKFYEFESKVNIDNK
FLLNDKRINSYSKNIGKLSNDINKNIKNNEKVWILSAQPLRTRTLLFEHECNTNFLNNPN
DIDEAFKSINNSTPLILKNKNNYEIEGFYLPIWKVVLITDKELFSQQSLFNNVFIRRKKR
SVNSNINLNKISPGDFIVHKNHGIGKFLKIEKINITGDSRDYLVIQYQDGKISVAADQLS
SVNRYRSSGKIKPKINKLGGTEWERIKDKNKKQIKKVAVDILKLYAKREKLKGYIYPEDG
PWQDELEESFPYQPTPDQITAVEEIKSDMESDKPMDRLVCGDVGFGKTEVAVRAIFKAIT
SGKQVILLAPTTILAQQHWRTINNRFSPYPIKVSLLNRFKTVNERKEIYAGLKNNKIDLV
VATHQILGKEIEIKNLGLLVIDEEQRFGVRQKEKIKKIKANIDVLTLSATPIPRTLYMSL
SGLRQMSLLNTPPPSRRSIKTYLSEIDMDVIRTAINQELDRGGQIFYVLPRISDIDQAVN
KLKNMFPSLKFIVAHGQMNETELENAMIAFNNGEVDLMICTTIIESGLDIPKVNTIIIED
SHKFGLSQLYQLRGRVGRSGVQAHAWLFYPNLNKINDAAKQRLKAIKDFSELGSGYQLAM
KDMEIRGVGSLLGEEQSGKVNAIGYDLYIEMLHEAISEISGQEIPEVNDTQIDLPINAFI
PATWILNREEKLEAYKSATECSNNDELTELATDWVNRYGNLPKPVESLIMIMRLKLLAKK
CGFNKIKLKKPNILIETKLKNSTFKILKNSLASSVQNKFHFDEGEQLSIITIRGLGVTEI
QYQIDQLMLWFGSFEREIKNFDKEPLMKKE
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atgagtttaaatactttagttgattatatttcgaactcacaaattacttctgaattaata
aaaagaatttcaaaaaataatgaattaaattttgttggttcaagtagatatgcgaaatca
ataatcttagatagcatcgcaaaaaaagagggaaaaaatatattattaatttctcctaat
gtagaaattgcctacaaatggattggttattttgaaagtataaatgataaagcagtctta
tattatcctccaacagaacatttaccatactcatcaattaataaatccaaagagattgaa
tttagtcagcttactgttttatcgaaattaataaaaaaaaagaaaaacgaacttaatatt
gttatatcaacagagagatcacttcaacctcatctaataaataaaaaattattaattgaa
aacaagttaaatttgcaaaaaggggttcaaatcgagattcaagaattagcaaataaactt
actttgcttggttatacgaaggataatgtaacttcaacagagggattctggagcaggaga
ggggaaataatagatatttatcctgtcaataatgagtttccaataagattagaatttttt
gataatgtaattgagaagataagagaatatgatcctaatacacagaaaacattagaaagt
atcaataatattgaaataatacaggctggatttgatttgctaattaaagataagttaaat
aatttttctaagaacggtatttttaattcagaagatataaataaaaataatcttgatcgt
tatttaggaatcattgaaaaacaaccctccaatataatagattttattgatagggaaaca
attcttgtaattgatgaattagaagattgtacgaaatttgcaaataactggtatctagat
tcagaaagtaatttttataattgtgagtatgaattaaatgagaaccttaaaaataatgat
attaatttagaggtcaaaccaaatttacatttaaagtttgacgaaatattaaattcacta
ggaaattttaatttgataaaattttatgaatttgaatctaaagtcaatattgataataag
tttttgttaaatgataaaagaataaattcatactctaaaaatataggaaaattatccaat
gatataaataaaaatataaaaaataatgaaaaagtatggatattatcagcacagccattg
agaactaggactttactttttgagcacgaatgtaatacaaacttcttaaacaaccctaat
gatattgatgaagcatttaagtcaattaataattccactcctttaattttaaaaaataag
aacaattatgaaatcgagggtttttatcttccgatatggaaagttgtccttataacagat
aaagaattattttcacaacaatctctttttaataatgtatttataagaagaaagaaaaga
agtgtaaattcaaatataaatttaaataagattagtcccggtgattttatagttcataaa
aatcatggaataggaaaatttttaaaaatagaaaaaataaatataactggagattcaaga
gattatttagtcattcagtatcaggatgggaagataagtgttgccgccgatcaacttagt
agtgttaacagatatagatcaagcggaaaaataaagccaaaaataaataaattaggaggg
acggaatgggaaagaataaaagataaaaataagaaacaaatcaaaaaagttgctgtggat
attttaaaactttatgcaaagagagaaaaattaaaggggtacatttatccagaagatggt
ccttggcaagatgaattagaggaatcattcccttatcaaccaacacctgatcaaattact
gctgtagaagaaataaagtctgatatggaaagcgacaagccaatggacaggctggtttgt
ggagatgtaggatttggtaaaacagaagtcgctgttcgggctatttttaaggctattaca
tcaggcaaacaggtaatattactagcacccacaacaatactagctcagcaacattggaga
acaataaacaatagattttcaccttacccaataaaagtatcattactcaatagattcaaa
accgttaatgaaagaaaggaaatctatgcaggcttgaaaaataacaaaattgatttagtt
gtagctacgcaccaaattttaggaaaagaaatagaaattaaaaacttaggactacttgtt
attgatgaagaacaaagatttggagtaaggcaaaaagaaaaaattaaaaaaatcaaagcc
aacatagacgttttaactctctcggcaactccaatcccaaggactctttatatgagctta
tctggactaagacaaatgagcttacttaatactcctcctccatcacgaagatcaataaaa
acatatttatctgaaatagatatggatgttataagaactgccattaatcaagaacttgat
aggggaggtcagattttttatgttcttccaagaatttcagatattgatcaagctgtaaac
aaattaaaaaatatgtttccaagcttaaaatttattgttgctcatgggcaaatgaacgaa
acagagcttgaaaatgcaatgattgcctttaataatggagaagtagatctaatgatatgc
acaacgataattgaaagtggattagacattcctaaagtaaatacaatcataattgaagat
tctcacaaatttgggctttcacaactttatcaacttagaggaagagttggtagaagcggt
gtacaagcacatgcttggttattttatccaaatctaaataaaattaatgacgctgcaaaa
cagagattgaaagctataaaagacttttcagaactaggaagtggataccaacttgcaatg
aaagatatggaaataagaggtgttgggagtttacttggagaagaacaaagtggaaaggtt
aatgctattggatatgatttatatatagaaatgctccatgaggctatttcagaaatcagt
gggcaagaaataccagaagttaacgatactcaaattgatctaccaataaatgcatttata
cctgcaacgtggatattaaacagagaagagaagcttgaggcatacaaatctgctactgaa
tgttcaaataatgatgaattaactgaattagctacagattgggtgaatagatatggaaac
ttaccaaaacctgttgagtctttaattatgataatgagactaaaattactagctaaaaaa
tgtggttttaataagatcaagctcaaaaagccaaacatcttgatagaaacaaaattaaaa
aattctacttttaaaattcttaaaaattctttggcaagtagtgttcaaaataaatttcat
tttgatgaaggagaacaattatcaataataacgataaggggtttaggagtaactgaaatt
caataccaaattgatcaactaatgttatggtttgggtcttttgaaagagaaataaagaat
ttcgataaagaacctcttatgaaaaaagaataa
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