Pradoshia sp. D12: F7984_01925
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Entry
F7984_01925 CDS
T06218
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
prd
Pradoshia sp. D12
Pathway
prd03030
DNA replication
prd03410
Base excision repair
prd03420
Nucleotide excision repair
prd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
prd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
F7984_01925 (ligA)
03410 Base excision repair
F7984_01925 (ligA)
03420 Nucleotide excision repair
F7984_01925 (ligA)
03430 Mismatch repair
F7984_01925 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
prd03032
]
F7984_01925 (ligA)
03400 DNA repair and recombination proteins [BR:
prd03400
]
F7984_01925 (ligA)
Enzymes [BR:
prd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
F7984_01925 (ligA)
DNA replication proteins [BR:
prd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
F7984_01925 (ligA)
DNA repair and recombination proteins [BR:
prd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
F7984_01925 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
F7984_01925 (ligA)
MMR (mismatch excision repair)
DNA ligase
F7984_01925 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
F7984_01925 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
BRCT_2
HHH
RNA_pol_A_CTD
PG_binding_1
Motif
Other DBs
NCBI-ProteinID:
QFK70103
UniProt:
A0A5J6XKF0
LinkDB
All DBs
Position
367019..369034
Genome browser
AA seq
671 aa
AA seq
DB search
MDIKEAQKRVAELQSLLNQYGYEYYVLDQPSVPDSVYDQTYKELVELESQYPELQTPDSP
TQRVGGQVLDTFAKVEHITPMLSLGNAFNESDLRDFDRRVNSGLGTDRYSYICELKIDGL
AVSLRYEEGLFVKGATRGNGTIGEDITANLKTIRSIPLRLNEPVTFEVRGEAYMPKKSFV
SLNAKKEENGEEPFANPRNAAAGSLRQLDPRIAASRNLDIFLYGIGETGETGVESHGEGL
DFLQKLGLKTNPHRRRCATIEDVLEYIEEWSAKRPELDYDIDGIVIKVDSLSQQEELGYT
AKSPRWAIAYKFPAEEVITILRDIELTVGRTGVITPTALLDPVRVAGTTVKRASLHNEDL
IREKDIRLGDHVVVKKAGDIIPEVVNVLFDKRTGEEKEFHMPTHCPDCDSELVRLEGEVA
LRCINPKCPAQIKEGMIHFVSRNAMNIDGLGEKVIIQLFDESLIKDVADIYKLTYDQLIN
LERMGDKSANNLLNAIEASKSNSLERLLFGLGIRHVGAKAARILAEEFEDMDRLMSANVA
ELTAINEIGDKMADAVVTYFNQEECQQLIDELKNAGVNMLYKGKKKNIAEATDSYFSGKT
IVLTGKMEKYGRTEAKELIEALGGTVTGSVSKKTDLVIAGEDAGSKLKKAQDLGIEIWDE
SNLLEELGKQG
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggatataaaagaagcgcaaaaacgagtggctgagcttcaatcactattaaaccaatat
ggatatgaatactatgttctcgaccagccatcagttcctgattctgtatatgatcagacg
tataaagagttggtggaattggagagtcaatatccggagctgcaaaccccagattcacct
actcaaagagttggtggacaagtgcttgatacgtttgcaaaagtagaacatattacaccg
atgctaagtcttggtaacgcctttaacgaaagtgatttgcgcgattttgaccgccgagta
aattcagggcttggtacagaccgatattcttatatatgtgaattgaaaatagatggactg
gcagtttccctgcgttatgaagaagggctatttgttaaaggggctacaagaggaaatgga
acaattggtgaggatattactgctaatcttaaaaccattcgttccatcccactccgattg
aatgaaccagttacatttgaggtacgcggtgaggcatatatgccaaagaaatcgtttgtt
tccttaaatgcaaagaaggaagaaaatggggaagagccatttgccaatccacgaaatgca
gcagcaggatccttgcgtcagcttgatccacgcatagctgcttcgcggaatttggatatt
ttcctttatgggattggtgaaacaggagaaacaggtgttgaatcccatggtgaaggactt
gactttcttcaaaaattaggattgaaaaccaatccgcatcgcagaagatgtgctacgatt
gaagatgtattagagtatattgaggaatggtcagccaaaaggcctgagcttgattatgat
attgatggaatcgtcatcaaagtcgattcactttctcaacaagaggaattaggatatact
gcaaaaagtccaagatgggcgattgcatataaattccctgcagaggaagtcatcactatt
cttcgcgatattgaattgactgtcggtcgtacaggcgttattacgccaaccgccttattg
gacccggtaagagtagcaggtacaacagttaaacgggcttcccttcataatgaggaccta
atccgtgaaaaagatattcggcttggagaccatgttgtcgtcaaaaaagccggtgatatt
attccggaggttgtcaatgttctgtttgataagcggacaggggaagaaaaggaattccat
atgccaacgcattgccctgactgcgatagtgagcttgttcgtttggaaggagaggtagct
ttgcgctgcatcaatccaaagtgtccagctcagattaaagaggggatgattcactttgtt
tcacgaaatgccatgaatattgatggtctgggtgaaaaagtcatcattcaattattcgat
gaatcgttaattaaggatgtagcggatatttataaattgacatatgaccagctgattaat
ttggagcgtatgggggataaatcagcgaacaatcttttgaacgctattgaagcatctaag
agcaactcattggagcgccttttatttggactgggaatccgccatgttggtgctaaggct
gcaagaatcctcgcggaagaatttgaagacatggatcgtctaatgtcggcaaatgtagct
gaattgacagctattaatgaaattggggacaaaatggctgatgcggttgtgacttatttt
aatcaggaagaatgccagcaattgatcgatgaattaaaaaatgctggggttaatatgctc
tataaaggtaaaaagaaaaatatcgctgaagctacagatagttatttttctggaaaaacc
attgtacttacaggaaagatggaaaagtacggacgaactgaagcaaaagagttgattgaa
gctttaggtggaactgtaacgggtagcgtaagtaaaaagacagatttagtaatagccgga
gaagatgccggatcaaaattaaaaaaagcccaggatttaggaattgaaatatgggatgaa
agcaatttactggaagaactgggcaagcagggatag
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