Plasmodium relictum: PRELSG_1401800
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Entry
PRELSG_1401800 CDS
T09405
Symbol
LigI
Name
(RefSeq) DNA ligase I, putative
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
prel
Plasmodium relictum
Pathway
prel03030
DNA replication
prel03410
Base excision repair
prel03420
Nucleotide excision repair
prel03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
prel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PRELSG_1401800 (LigI)
03410 Base excision repair
PRELSG_1401800 (LigI)
03420 Nucleotide excision repair
PRELSG_1401800 (LigI)
03430 Mismatch repair
PRELSG_1401800 (LigI)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
prel03032
]
PRELSG_1401800 (LigI)
03400 DNA repair and recombination proteins [BR:
prel03400
]
PRELSG_1401800 (LigI)
Enzymes [BR:
prel01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PRELSG_1401800 (LigI)
6.5.1.6 DNA ligase (ATP or NAD+)
PRELSG_1401800 (LigI)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
PRELSG_1401800 (LigI)
DNA replication proteins [BR:
prel03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
PRELSG_1401800 (LigI)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
PRELSG_1401800 (LigI)
DNA repair and recombination proteins [BR:
prel03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
PRELSG_1401800 (LigI)
NER (nucleotide excision repair)
Other NER factors
PRELSG_1401800 (LigI)
MMR (mismatch excision repair)
Other MMR factors
PRELSG_1401800 (LigI)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
ICE2
Motif
Other DBs
NCBI-GeneID:
39738448
NCBI-ProteinID:
XP_028534810
LinkDB
All DBs
Position
14:complement(90869..93823)
Genome browser
AA seq
916 aa
AA seq
DB search
MKLLILLFLTKMIYCKIKSYMRTEYNYILPLVKKKKLYNHKINFNVKVFKNFTKNSSNRH
NDLLYVYFKKCLSFPKKSNNNEKNEKLDDEVSTNSEEKEISKRKITNDTNIKTKRLKGKN
ENEIKKGSLFNCIVNEEEKINDLASPKFNPVYFDVSNLYLSEKDKAKHKFKDSLLFTFLT
NTFNKIEELKGSGTGSKKNVSIILSNVFRVLIYYSPNDLIPAIYITLNKVAPDYLNVEAG
VGEALILKTMSEAYSRTEASIKKDLQQIEDLGIIAENCSCKMRTIFPLPRLTIQSVFNEL
KNIPNLSGSNSQQKKREVIKKLLVSAKTSEAKYIVRFLQQRLRIGVNCATVLQALSYAFI
LTRPSIPEDIRKKGIMINEDLIKSDINDNSNDYIIKKENNMEKNGIKEENDEEKKKDNKV
EKKENFENIKMEEENPNNLCDFDSLINSIKVRNEKINKPNLFFNIGKEGDTRLLPIFKEL
KKAYCESSDMDIFECMEKSVKGALCGLPNIEIIVQNLLNGDDMNTLSKKCTVKTGVPVQP
MLAKPTKGIQEVLDRFNNVTFTCEYKYDGERAQIHYLDKNNIKIFSRNLENMTEKYPDVI
QIVKDQIVDSVTECIIDSEVVAYDMESKKILPFQVLTTRKRKDVDIENIKVKICLFPFDL
ICCNGISVIKEPLEIRRKLLYSLLKSKEGVLSFAVHSEMNNIEDIDIFLQDAIESNCEGL
MVKTLLENASYEPSKRSLNWLKVKKDYIEGLSDSVDLVPIAGYYGKGKRSGVYGAFVLAA
YNSETENFQTVCKAGTGFNDEILITLYNLLNEKIIPNKKSYYEVSDKLNPDVWFDAHYVW
EIKAADLSLSPVHTAAIGVYSDDKGIGLRFPRFLRLREDKNAEQATTTQQIIDFYESQFT
SNKNKNNDFNEESESD
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atgaaattgctaatattactgtttttaactaaaatgatttattgtaaaataaaaagttat
atgagaacagaatataattatatattacctttagtgaaaaagaaaaagttatataatcat
aaaattaattttaatgtaaaagtttttaagaattttacaaagaactcttcaaatagacat
aatgatttgttgtatgtatattttaaaaaatgcttatcgtttccaaagaaatcaaataat
aatgaaaaaaatgaaaaattagatgatgaagtaagcacaaatagtgaagaaaaggaaata
tcaaaaagaaaaattacaaatgatacaaatataaaaacaaagagattaaaaggaaaaaat
gaaaatgaaataaaaaaggggtctttatttaattgtattgtaaatgaagaggaaaaaata
aatgacttagcatctcctaaatttaatcccgtttattttgatgtaagtaatttatattta
tctgaaaaagataaagcaaaacataagtttaaagattctttattatttacctttcttaca
aatacttttaataaaatagaagaattaaaaggtagtgggacaggtagtaaaaaaaatgta
tcaattattttatctaatgtctttagggttctaatatattatagccctaatgatctaatt
cctgctatttatataacattaaataaagttgcacctgattacttaaatgtagaggccgga
gtgggggaagcattaattttaaaaacaatgtcagaagcatatagtagaaccgaagcaagt
ataaaaaaagatttacaacaaattgaggatttaggaataatagcagaaaattgttcttgc
aaaatgagaactatttttcctttacctcgtttaactattcaatcagtatttaatgaattg
aaaaatataccaaatcttagtgggtctaattctcaacaaaaaaagagagaagtaataaaa
aaattattagttagcgcaaaaactagtgaagctaaatatatagttcgatttttgcaacag
cgtttaagaataggagtaaattgtgctaccgtcttacaagcattatcatatgcttttatt
ttaactcgtccttctatacctgaggatattagaaaaaaagggataatgataaacgaagat
ttaataaaatcagatataaacgataatagtaatgattacataattaagaaagaaaataat
atggaaaaaaatggtattaaagaagaaaatgatgaagaaaaaaaaaaagataacaaagta
gaaaaaaaagaaaattttgaaaatataaaaatggaagaagaaaatcctaataatttgtgt
gatttcgattctctaattaattccattaaagtaaggaatgaaaaaattaataaacccaat
ttattttttaacataggaaaagaaggagacactcgtctactaccaatatttaaggaatta
aaaaaagcttattgcgaaagtagtgatatggatatctttgaatgcatggaaaaatcagta
aaaggtgctttgtgtggattaccaaatattgagattattgttcagaatttattaaatgga
gatgatatgaacactttaagtaaaaaatgtactgttaaaacaggggttcctgttcaacct
atgttagcaaagccaacaaaaggaatacaagaagttttagatagatttaacaatgtaaca
tttacatgcgaatataaatatgatggagaaagagctcaaattcattacttagataaaaat
aatataaaaatatttagtagaaatttagaaaatatgactgaaaaatatccagatgttatt
caaatagtgaaagatcaaattgtagattctgtaacagaatgtattattgatagtgaagtt
gttgcttatgatatggaaagtaaaaaaattttaccttttcaagtattaacaacaagaaaa
agaaaagacgtagatattgaaaatattaaagtaaagatatgtctttttccatttgattta
atttgttgcaatggtatatctgttataaaggagcctttagaaattagaagaaaactttta
tattctttactaaaatctaaagagggagtgttatcttttgcagttcattctgaaatgaat
aatattgaagatatagatatatttttacaagatgctattgaaagtaattgtgaaggttta
atggttaaaacgttacttgaaaatgcctcatatgaaccttcgaaaaggtctttaaattgg
ttaaaagtaaaaaaagattatattgaaggattatcagattcagttgatttagttcctata
gctggttattatggaaaaggaaaaagaagtggggtatatggagcattcgttttagctgca
tataattcggaaactgaaaatttccaaactgtatgcaaagcaggtacagggtttaatgat
gaaatattaattactttatataatttattgaatgaaaagattatacctaataaaaagtct
tattatgaagtttccgacaagttaaatcctgatgtgtggtttgatgcgcattatgtatgg
gaaataaaagcggccgatttatctttatcaccagttcacacggctgctattggagtatat
tcagatgataaaggaattggtttaagatttcctagatttttgagattaagagaagacaaa
aatgctgaacaagcaacaacaacgcaacaaataattgatttttatgaaagccaatttaca
tcaaataaaaataaaaataacgattttaatgaagaaagtgaaagtgactaa
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