Poecilia reticulata (guppy): 103476505
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Entry
103476505 CDS
T05149
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
pret
Poecilia reticulata (guppy)
Pathway
pret03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pret00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
103476505 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pret03400
]
103476505 (lig4)
Enzymes [BR:
pret01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
103476505 (lig4)
DNA repair and recombination proteins [BR:
pret03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
103476505 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
ATG17_like
Motif
Other DBs
NCBI-GeneID:
103476505
NCBI-ProteinID:
XP_008427134
UniProt:
A0A3P9NMB2
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All DBs
Position
LG2:1162694..1167693
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AA seq
908 aa
AA seq
DB search
MEGTSKSGAAAAEPSVAAQVPFLHLCTTLEKIQKSKLRPDKSKILGDFIESWRKFYAALH
KDNPKTTDSFYPAMRLIVPPFERERMAYGIKESMLAKLYIDVLGLPKNGPEASKLLNYRA
PTTSQGEAGDFAGMAYFVLKKRCTSQGNLSIKEVNDFLDSVAINNASKQKDQVKKSLLHL
ITQSSALEQKWLIRMILKDMKLGVSKETVLQVFHPDAAELYNVNTDLKKVCQQLHDPSVS
LSEVSIELFSAFKPMLAAVANIRNIEKQMGNSPFYLETKLDGERIQLHKDGDVYKYFSRN
AFEYTQQFGGSPLKGSLTPYIHNVFKSNVVNCILDGEMMAFNPTAGTFMQKGSKFDIKRL
IDDSELQTCFCVFDVLLVNNQKLGKEPLKKRYEVLQTVFTPVKGRIHVVPKTEVGTMQDV
VNALNDAIDNREEGIMVKDPLSIYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGKG
RRGGMMSHFLCGIAEAPKPGEKPSVFHSFCRIGSGYTMKELYDLGLKLAKHWKVYRKNDP
PTSILCGVEKPEVYIEPCNSVIIQVKAAEIVGSDMYKTNCTLRFPRIEKIREDKEWHQCM
TLAELDQFRSKASGKLASRHLHIDGDEPQKKKRKLPVKPKKVVGVIDHFKNQDLSGVSKE
TDMFEDVEFCILNGTEGHPKSELEKGVARCGGIVVQNPGRDTYCVVAGVENMRVKNLISS
NQHDVVWASWLLECLDQKEVVPWQPRHMIHMSPSTREHFAKEYDTYGDSYFVDTDEQQLR
EVFSRIDGEQAAAASVGAAEVEERYGWDDLLTSMFRPFTFYFDILDPKSATGATCLDIRA
LEVRYHGGTVAKALEEGVSHVVVEEETRLLELRTLRRRFRRKFKIVRDSWVTDSIAAGHL
MDDPDYLV
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atggagggaacatccaaaagtggagcagctgctgcagagcccagcgttgctgctcaggtt
cctttccttcacttgtgcacaactttagagaaaatccagaagtccaaactccgtccagat
aaatccaagatccttggggatttcattgaatcatggcggaaattttatgccgctctccac
aaggacaacccgaaaactacagactccttctaccctgctatgcgcctcattgtcccgcct
tttgagcgagagcgaatggcatacggcatcaaagagagcatgctagctaagctctacatt
gatgttttaggcctcccaaagaatggtccagaagccagtaagctcctgaactaccgtgcg
ccgactacatcccaaggagaagcgggggattttgccggcatggcgtactttgtgctgaag
aagcgatgtaccagccaaggaaacctcagtatcaaagaggtcaatgactttctcgactca
gtggccatcaacaatgccagcaagcagaaggatcaggtgaaaaagagcctgttgcacctc
atcactcagagctctgctctggagcaaaagtggcttattaggatgattctgaaggacatg
aagcttggagtcagcaaggaaactgttctccaggtcttccacccggatgccgcggagctc
tacaacgtcaacacggacttaaaaaaggtgtgccagcagctgcacgacccgtctgtgtct
ttaagcgaagtctcaattgaactcttctctgccttcaagccaatgttggcagcggtggcc
aacatccgcaacatcgagaagcagatgggcaacagccccttctaccttgagacaaagctg
gatggggagcggattcagcttcacaaggacggagacgtgtacaagtacttcagccggaac
gcgtttgaatacacgcagcagttcggaggatcgccgctcaagggatcgctcactccttac
atccacaacgtgttcaaaagcaacgtcgtaaactgcatcctggacggcgagatgatggcg
ttcaatccgacggcggggaccttcatgcagaaagggagcaaatttgacatcaagagactg
atcgacgactctgagctgcagacgtgcttctgcgtctttgacgtgttgctagttaataac
caaaaacttggcaaagaaccgctgaagaagcggtatgaggtcctccagacggtcttcacc
cccgtcaaaggtcgaatacatgtggtaccaaagacagaagtgggaacaatgcaagatgtt
gttaatgctcttaacgatgccattgataacagggaagaagggattatggtgaaggaccct
ttgtccatctacaaacctgataaacgaggggagggttggctgaaaataaagccagagtat
gtggacggcttgatggatgagctggacctgctgattgttggtggttactgggggaaaggg
agacggggcgggatgatgtcccactttctgtgtggaatcgcagaagcgccaaagcctggt
gagaagccgtcggttttccactccttctgccgaattggctcgggttacaccatgaaagag
ctgtacgaccttgggctgaagcttgcaaagcattggaaagtctaccggaaaaacgacccg
ccgacgtccatcctctgtggagtggagaaaccagaggtgtacatcgagccctgcaactcg
gtcatcatccaggtcaaagcggccgagatagtcggaagcgacatgtacaagaccaactgc
accctgcggttccccaggatcgaaaagatccgcgaggacaaggagtggcaccagtgcatg
actctggcagagctggatcagttccgcagcaaggcgtccgggaaactagcctcgcggcac
cttcacatcgacggcgacgaaccacagaagaagaagcggaagctgcctgtcaaacccaag
aaggtggttggcgtcattgaccacttcaaaaaccaggacctgtccggggtttccaaggag
acggacatgtttgaggatgtggagttctgcatcctgaacggcactgaaggtcacccaaag
tcagagctggagaagggcgtggccaggtgtggcggcattgtggtccagaacccgggacgg
gacacctactgcgtggttgccggcgtggagaacatgcgcgtgaagaacctgatttcctcc
aatcagcacgacgtggtctgggcgtcatggctgctggagtgcctggatcagaaggaagtg
gtgccgtggcaaccacgccacatgatccacatgtcgccctcgaccagggaacacttcgcc
aaggagtacgacacctacggcgacagctactttgtcgatacagacgagcagcagctgagg
gaagtgttcagcaggatcgacggcgagcaggcggcggcagcgtccgtcggcgcggcggag
gtggaggagcgttacggctgggacgacctcctaaccagcatgtttagacccttcaccttt
tacttcgacatcttggatccgaaaagcgcaacaggtgctacctgtctggacatcagggcg
ctggaggttcgatatcatggagggacggtggctaaggcgctggaggaaggagtttctcac
gtcgttgtcgaggaagagacgagactcctggagctgaggacgctgaggcgccgcttcagg
aggaagtttaagatcgttagagactcgtgggtaaccgactccatcgcagcagggcatctg
atggacgatcctgactacctggtttga
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