Poecilia reticulata (guppy): 103479258
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Entry
103479258 CDS
T05149
Name
(RefSeq) regulator of nonsense transcripts 1-like isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pret
Poecilia reticulata (guppy)
Pathway
pret03013
Nucleocytoplasmic transport
pret03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pret00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
103479258
03015 mRNA surveillance pathway
103479258
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pret03019
]
103479258
Enzymes [BR:
pret01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
103479258
5.6.2.5 RNA 5'-3' helicase
103479258
Messenger RNA biogenesis [BR:
pret03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
103479258
mRNA cycle factors
Common to processing body (P body) and stress granule
103479258
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
103479258
NCBI-ProteinID:
XP_008431824
LinkDB
All DBs
Position
LG17:7980097..8009019
Genome browser
AA seq
1120 aa
AA seq
DB search
MSVEAYGPNSQTLTFLDTEESELLGADTQGSEYDFTDFTLPSQTQTQTQTQTHSQSDNQV
SGSDVLLQNGDDPVAKASQLLAELNFEEDEEDAYYSKDLPLHACCCSVFYSWHFCSYCGI
HDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGC
RNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSE
QEQLRARQITAQQINKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGP
LVKLEADYDKKLKESQTQENITIRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKG
DLAPPWKGIGHVIKVPDNYGDEIAIELRSSAGAPVEIPHNFQVDFVWKSTSFDRMQSALK
TFAVDETSVSGYIYHKLLGHEVEDVLIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLS
LIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKS
REAIDSPVSFLALHNQTRNMESMPELQKLQQLKDETGELSSSDEKRYRALRRTAERELLM
NADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGTKQLILVGDHCQLGP
VVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAA
DRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPD
QIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQ
GIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRE
SLMQFNKPRKLVNAINPGGRFMSTAMYDAREALIPGSVYDRSSNGRPSNMYFQTHDQIGM
ICSGIGPMSSMNIPIPINLVMPPIPPPGYLGQLNGPSAGRGESMKNKSAGTSGSGTRGAR
QRNSGDVGIDGVQPGGHMTGSQASQDQGSQPFSQGPLTQGYISMSQPSQMSQPGLSQPEL
SQDSYLGDEFKSQFDVALSQDSTYQGERAYQHGVTGLSQY
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggccgaactcgcagaccctgacgttcctggacaccgaggag
tcggagctgctgggagcggacacccagggctccgagtacgacttcaccgattttaccttg
cccagccagacccagacccagacccagacccagacccacagccagtcagataaccaggtc
agcggttctgatgttttgctgcagaatggagatgaccctgtggcgaaagctagccagctc
cttgcagaattaaactttgaggaagatgaggaggatgcttactatagcaaggacctccca
ttgcatgcctgctgttgttctgttttttattcctggcatttctgtagttactgtggaatt
cacgatccagcctgtgtggtctactgcaacaccagcaagaaatggttctgtaatggccgt
ggaaatacatccggcagccacatcgtgaaccacctggtgagggccaagtccaaggaggtg
accctgcacaaagatgggcctctgggagagacggtgttggagtgctacaactgtggctgc
cgcaacgtcttcttgctgggtttcatcccagccaaggccgactcagtggtggtgttgctg
tgcagacagccgtgtgccagtcagagtagcctgaaggacattaactgggacagctcccag
tggcagccactcatccaggaccgctgcttcctgtcttggctggttaaaatcccctcagaa
caggagcagctccgggcccggcagatcaccgcccagcagatcaataagctggaggagctg
tggaaggaaaatcccactgctactctggaggacctggaaaagcctggagtggacgaggag
ccacagcacgtcctcctgcgatatgaggatgcctatcagtaccagaatatctttggtcct
cttgtaaagctggaggctgactatgataagaaactgaaagagtcacagactcaagaaaat
ataacgattagatgggacctgggcctgaataaaaaaaggattgcttatttcacccttccc
aagactgactctgatatgcgactaatgcagggtgatgaaatctgcctcagatataaagga
gacctggcccctccatggaaaggcattggacatgtcatcaaagttcctgacaactacggc
gatgagattgccattgagcttcggagtagtgctggagctccagtggaaatccctcataac
ttccaggtggactttgtgtggaagtccacctcctttgacaggatgcagagcgccctgaaa
acttttgctgtggatgagacttcagtttctggctacatctatcacaagttgctgggacac
gaggtggaggacgtgctcattaagtgccagctgcctaaacggttcactgctcaaggcctg
cctgacctcaaccactctcaggtctatgctgtgaagacggtgttgcagcgacccctcagt
ctgatccagggcccccctggcacagggaagacggtcacctcagctaccatagtgtaccat
ttggctaggcagggaaacggaccagtgctggtgtgtgctcctagtaacattgctgttgat
cagctgactgagaagattcaccagacggggctgaaggtagtgagactttgtgccaaaagc
agggaagctattgattctccggtgtctttcctggctctgcacaaccagacccggaacatg
gaaagcatgccggagctgcagaaactccagcagctgaaggatgagaccggagagctgtcg
tcctctgacgagaagcgctacagagctctgagacgcactgctgagcgggagctgctcatg
aatgccgatgtgatctgctgcacatgtgttggagcaggagatccacgtctggctaaaatg
cagttccgatctatcttgattgatgaaagcactcaggccacagaaccagagtgcatggtg
ccggttgtccttgggaccaaacagctgattctggtgggggatcactgccagctaggacct
gtggtgatgtgtaagaaggcagcaaaagcaggcctgtcccagtctctgtttgagcgcctt
gtggttctgggcatcaggcctatccgtctgcaggtccagtaccgcatgcacccggccctc
agcgcgttcccctccaacatcttctatgagggctccttgcagaatggagttactgctgct
gatcgggtgaaaaaaggctttgatttccagtggccacagccagacaagcccatgttcttc
tatgtcacccaaggccaagaggagatagcaagctctggaacatcctatctgaacagaact
gaggctgccaatgtggagaaaataaccacaaggttactgaaggctggggctaaacctgac
cagatcggcatcatcactccctatgaaggacagcggtcctacctggtccagtacatgcag
ttcagtggctccctccataccaagctctatcaggaagtggaaatcgccagtgtggatgcc
ttccaaggcagagagaaagatttcatcatcctttcctgtgtgagagccaatgagcaccag
ggcattggcttcctcaatgaccccagacgtctcaacgtggcgctcaccagggcccgatac
ggagtgatcattgtggggaatccgaaggccctgtccaagcagcctctgtggaaccacctg
ctcaactattacaaggagcagaaggttcttgtagaaggcccattaaacaacctgagagag
agcctcatgcagttcaacaagccacggaagctggtcaacgccatcaacccaggtggccgc
ttcatgagcacagccatgtatgatgccagggaggcgctgattcctggctctgtttatgac
cgcagcagcaacggcagaccttccaacatgtacttccagactcatgaccagatcggtatg
atctgttccggaatcggtccaatgtcgtccatgaacattcctattcccatcaaccttgtg
atgcctcctatccctccacctggttatttaggacagctgaacggcccctctgcaggtcgt
ggtgaaagcatgaagaataaatcagccggcacaagcggcagtggaactcgaggtgctcgt
caaagaaacagtggagacgtgggaatagacggagttcagcctggaggtcacatgactggc
agccaggctagccaggaccagggctcccagccgttctcccaggggcccctcacacaaggc
tacatcagcatgagtcagccctcccagatgagccagcctgggctctcccagcctgaactg
tcacaggacagttacctaggagatgaattcaagtcccagtttgatgtggctctgtcccag
gactccacataccagggggaacgggcctaccaacatggagtgactggactgtcccagtac
tag
DBGET
integrated database retrieval system