Poecilia reticulata (guppy): 103479496
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Entry
103479496 CDS
T05149
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
pret
Poecilia reticulata (guppy)
Pathway
pret03030
DNA replication
pret03410
Base excision repair
pret03420
Nucleotide excision repair
pret03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pret00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
103479496 (lig1)
03410 Base excision repair
103479496 (lig1)
03420 Nucleotide excision repair
103479496 (lig1)
03430 Mismatch repair
103479496 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pret03032
]
103479496 (lig1)
03400 DNA repair and recombination proteins [BR:
pret03400
]
103479496 (lig1)
Enzymes [BR:
pret01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
103479496 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
103479496 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
103479496 (lig1)
DNA replication proteins [BR:
pret03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
103479496 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
103479496 (lig1)
DNA repair and recombination proteins [BR:
pret03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
103479496 (lig1)
NER (nucleotide excision repair)
Other NER factors
103479496 (lig1)
MMR (mismatch excision repair)
Other MMR factors
103479496 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
103479496
NCBI-ProteinID:
XP_008432184
UniProt:
A0A3P9Q647
LinkDB
All DBs
Position
LG17:16426254..16507331
Genome browser
AA seq
1002 aa
AA seq
DB search
MQRSIASFFQPRIKVKDSQKKTADEPVNKPIKSPLKVQNGVQEADSPIKKVAKRSRQILD
SDEDEAPLVKEQGDKGAPAKTEKTDDVFKAVPTPLSPTPAPSTPITLETPETSASSTSSG
SPSSPSSTSTSRIVKRKTARKMFPKRKLDESESRKGESEVAEEQGQQNKRPRLESGVSSA
ENTDEPMEEGAKEEKVEKPVAEANSPDEEVGNEKTEGEKAKKEEEQVEEKISDEKEKKAE
GAEKKNEAKEKTDDEKGASVAKDKVVEKDTKDTGSPKSQMGEKKQKEAKEQKDKELAKKT
PISSFFAPRKAAVKTEKPEKNEGEKKTSAERKSSDEEQKDAKGESTSGETDYNPSRPNYH
PVDHACWKQGQKVPYLAVARTFEKIEEDSGRLRNIETLSNLLRSVLLLSPDDLLCCVYLC
LNQLGPAYLGMELGIGETVLMKAVAQATGRHLDKIKAEAQEKGDLGLVAESSRSNQRTMF
QPASLTAGGVFKKLKEIASMSGNSAMNKKIDIIKGLFVACRFSEARYIVRSLAGKLRIGL
AEQSVLAALSQAVCLTPPGQGFPPAVIDAGKGMSAESRRAWIEEKNLILKQTYCEMPNYD
VIIPVLLKAGIDQLPKHCKLTPGVPLRPMLAHPTKGVGEVMKRFDEAAFTCEYKYDGERA
QIHILESGEVRIFSRNQEDNTSKYPDIISRLPKVKKDSVVSCVLDTEAVAWDREKKQIQP
FQVLTTRKRKDVDASEIKVQVCVYAFDLLYLNGESLVRQPLCRRRELLRESFTEVEGEFL
FARSIDSHDTDAIAEFLEQSVRDSCEGLMVKTLEKDATYEIAKRSHNWLKLKKDYLDGVG
DTVDLCVIGAYLGKGKRTGTYGGFLLACYDEDNEEFQSVCKIGTGFKDEDLEQHYKFLKE
HILAKPRPYYRVDQSAEPDVWLDAVQVWEVKCADLSLSPVYKAAMGMVDAEKGISLRFPR
FLRIRDDKKPEDATTGAQIADLYKKQQQIQNQGEKADPEDYY
NT seq
3009 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggagcatcgcatcgttttttcagcccaggatcaaggttaaagacagccagaag
aaaactgcagacgaaccagtgaacaaacccatcaaaagccccttgaaggtgcagaacggc
gtccaggaagcggattcgccgatcaagaaggtcgccaagcgcagccggcaaatactggac
agcgacgaagacgaggcgccgcttgtaaaagaacaaggcgacaaaggagctcccgctaaa
actgagaagacggacgatgtgttcaaggccgttcccaccccgttgtctccaacgccggcc
ccatccacacccataaccctggaaaccccggagacgtcggcctcctcgacgtcgtcaggg
tcgcccagttctcccagttccacctccacgtctagaattgtgaagcgcaaaactgcgagg
aagatgttccccaagaggaagctggatgagagcgagagtcggaaaggggagtccgaggtc
gcggaggagcagggtcagcaaaacaaacgaccccgcctggagagcggtgtcagcagtgca
gagaacaccgatgaacccatggaggagggagcaaaggaagaaaaggttgaaaagccagtg
gctgaggctaacagcccagacgaggaggtggggaacgagaaaacagaaggagagaaggcc
aagaaggaggaggagcaggtagaagaaaagatctctgatgagaaagaaaagaaagctgag
ggggcggaaaagaaaaatgaagcaaaggagaagacggatgatgagaaaggggcctctgtc
gccaaagacaaggtggttgaaaaggacacgaaagacacagggagcccaaaaagtcaaatg
ggagaaaaaaagcagaaagaggcgaaggagcagaaagataaggagctggccaagaaaacc
ccaatcagcagtttctttgctccccgaaaagcagcagttaagacagagaaaccagagaag
aacgaaggagagaaaaagacgagtgcagagaggaagagctccgatgaggaacagaaagac
gcaaaaggtgaatcaacctcaggagagacggactacaatccatccagaccaaactaccat
ccggtggaccacgcctgctggaaacaaggccaaaaagtgccgtacttggcagtggctcgc
acctttgagaaaattgaagaggactctggcaggttgagaaacatcgagacgctgtcgaac
ctgctccgctcggtgctgctgctctctccagacgacctgctgtgctgtgtgtacctgtgt
ctgaaccagctcggccccgcctaccttgggatggagcttggcatcggggagacggtgctg
atgaaagccgtcgctcaagcaaccgggcgacatttggacaaaattaaagcggaggcgcag
gagaaaggagatttgggcctggtggccgagagttcccgtagcaaccagcgcaccatgttc
cagccggccagtctgacagcaggaggcgtgtttaagaaattgaaggaaattgccagcatg
agtgggaactcggccatgaataagaaaatcgacatcatcaaaggcctctttgtggcgtgc
cgcttctccgaggcccgctacatagtcaggtctctggctgggaagctgaggattggcctt
gctgagcagagtgtcctcgccgcgctgagccaggccgtctgcttgaccccgcctggacaa
ggtttccctcctgctgtgattgatgcaggaaagggcatgagcgctgagagcaggcgggcc
tggatcgaagagaagaacctcattctgaaacaaacatactgcgaaatgccaaattatgac
gtcatcatcccagttttactgaaagcaggcatcgaccagctgcccaaacactgcaaactc
actccaggagtcccgctgaggcccatgttggctcaccccaccaagggtgtcggcgaggtg
atgaagaggtttgacgaggcggcgttcacctgcgagtacaaatatgacggagagcgtgca
cagattcacattctggagagcggcgaagttcggattttcagccgcaaccaggaagacaac
accagcaaatacccagatatcatctcccgcctccccaaggtgaagaaggactctgtagtg
tcttgtgttctggacacggaggcggtggcctgggatcgagagaagaaacagatccaaccc
ttccaagtcctcaccactcgtaagagaaaggatgtggacgcctccgagatcaaagtccaa
gtgtgcgtgtatgcctttgacctcctctatctcaacggagagtccctggtgcgacagccg
ctgtgtcggcgtcgggagctgctgagagagagcttcacagaggtggagggagagtttctg
ttcgcccgttccatcgactctcacgacactgacgccatcgcagagttcctggagcagtcc
gtccgagactcctgcgagggcctgatggtgaagactctggagaaggacgcgacctatgag
attgccaagcgttctcacaattggctcaagttaaagaaggactacctggacggtgtgggc
gacacggtggacctctgcgtgatcggtgcctacctgggaaagggaaaacgaacaggcacc
tacggtggcttcctgctggcctgctacgatgaagacaatgaggagtttcagtcagtctgc
aagatcgggacaggctttaaggatgaagatctggagcagcattacaagtttttaaaggag
cacatcctggccaaaccccgcccctactaccgcgtggaccaatcagccgagcccgacgtg
tggctggacgctgtgcaggtttgggaggtgaagtgcgccgacctctcgctgtcacccgtc
tacaaggctgccatgggaatggtggatgcagagaaaggcatttctctgcggttccctcgc
ttccttcgcatcagagacgacaagaagcctgaggatgccaccaccggagctcagatcgcc
gatttgtacaagaagcagcagcagattcagaatcaaggggagaaagctgacccggaggac
tactactga
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