Poecilia reticulata (guppy): 103479723
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Entry
103479723 CDS
T05149
Symbol
thoc1
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
pret
Poecilia reticulata (guppy)
Pathway
pret03013
Nucleocytoplasmic transport
pret03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pret00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103479723 (thoc1)
09122 Translation
03013 Nucleocytoplasmic transport
103479723 (thoc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pret03019
]
103479723 (thoc1)
03041 Spliceosome [BR:
pret03041
]
103479723 (thoc1)
Messenger RNA biogenesis [BR:
pret03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
103479723 (thoc1)
Spliceosome [BR:
pret03041
]
Complex C
Other components
EJC/TREX
103479723 (thoc1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
103479723 (thoc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
Motif
Other DBs
NCBI-GeneID:
103479723
NCBI-ProteinID:
XP_008432540
UniProt:
A0A3P9NJV7
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All DBs
Position
LG17:complement(20216819..20223533)
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AA seq
654 aa
AA seq
DB search
MSPPVFNFVDVKEKFTXAARQALXGKTCKHLITVFSQISGNETEKKTTLDQALRGVLGDQ
IIEQKTSCDDYLSLIYLSIDAVTEGICSATIPFVLLGDVLDCLPLDLCDKIFSFVEKNVS
TWKSSSFYTAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQF
NLDNITVFNKNEQESTLGQKQTDEKEDTMEVEEGEMGEDDAPAPCSIPIDYNLYRKFWML
QDYFRNPLQCYDKFSWMTFLKFSDETLAVFKSFKLDDMQASKRKMEDLRASDGEHVYFAK
FLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSSCILNDDQSAWIEETTKLV
YQLLRETPPEGEKFATMVEHILNTEENWNSWKNEGCPSFVKERTSDDKPKRPTRKRQAPE
DFLGKGPERKIFMGNDELTRLWNLNQDNMEACKSESREFMPSLDEFFAEAIEQADPVNMV
EEEYKVVRNPNYGWRALRLLSRRSPHFFQPTNQKFKSLADYLDSMVSKLAKELPKDIPSE
EIKTGEEDDDDNGDNLLKDSNDSPSIQSKTVTNHQMDDIAAKLGSQWKTLASHLEMKAAE
MREIETDSEDVDVQAKLLLVAWQEREGSQATVENLATALSAAGFSQLAERLSEA
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgtcaccccccgtattcaattttgtcgatgtaaaggagaaatttacgrctgctgccaga
caggctctcwccggtaaaacctgcaaacatctaatcaccgtgtttagccagatctccgga
aatgagacagaaaagaagaccacacttgaccaggccctgcggggtgttctcggtgatcaa
attattgagcagaagacgagctgtgacgactatctgtctctcatctacctgagtatcgat
gctgttactgagggaatctgctctgccacaatcccattcgtcctgctgggagatgtactg
gactgccttccccttgacctgtgtgacaaaatattctcctttgttgagaaaaatgtctcc
acctggaaatcgagctcattctacacggcaggaaagaactatctgctgagaatgtgcaac
gatcttctgaggaggctgtccaaatcccagaatactgtattctgtgggcgaatccagctt
ttcctggcacgactcttccctctatctgagaaatctggtctgaatctgcagagtcagttt
aacctggacaacataacggtgttcaacaagaatgagcaggagagcactcttggccagaag
cagacggatgaaaaggaagacaccatggaggtggaggaaggtgaaatgggggaggatgat
gcacctgcgccytgttctatcccaattgattacaacctatacagaaagttctggatgttg
caggactacttcagaaatccgctgcagtgctacgacaaattctcctggatgacgttcctt
aagttttcagacgagaccctcgcagtattcaagagcttcaagctggacgacatgcaggcc
tctaaaaggaagatggaggacctcagagcctctgatggcgaacatgtttattttgccaaa
ttcctcacaagtgagaagctgatggacttgcagctcagcgacagcaacttcagacggcat
atactgctgcaatacctgatcctcttccagtacctgaaggggcaggttaaattcaaaagc
tccagctgcattctgaacgacgaccagagtgcatggattgaggagacgacaaagctagtt
tatcagctgctgagagaaacgcctcctgaaggagaaaaattcgccaccatggtggagcac
attctcaacacggaggaaaactggaactcctggaagaacgagggctgtccgagcttcgtg
aaagaaagaacatctgacgacaaacctaaaaggcccaccaggaaaaggcaagctccagag
gacttccttggaaaagggccagagcgcaagattttcatgggaaatgatgagttgactcga
ctgtggaacttgaaccaggacaacatggaggcctgcaagtctgaaagcagagagtttatg
ccatcactggacgagttctttgcagaagccattgagcaggccgacccagtcaacatggtg
gaggaggaatataaggttgtgcgtaacccaaactacgggtggcgggctttgaggctcctg
tccaggaggagtccacacttctttcagccaacgaaccagaagttcaaaagcctggcagac
tacctagacagcatggtcagcaaactggccaaagagctgccgaaggatatcccttcagaa
gaaatcaagacaggagaagaggatgatgacgataatggagataatcttcttaaagacagc
aatgacagtccgagcatccagagtaaaactgtaacaaaccatcagatggacgacatcgca
gccaaactggggtcccagtggaagacgctggcgtctcatctggagatgaaggcagcagag
atgcgggaaatcgagacggacagtgaagatgtggacgttcaggccaagctgctgctggtg
gcctggcaggagcgagagggatcccaagcaacagtggagaacctggcaacggctctcagc
gcggctgggttctcccagcttgcagaacgcctcagtgaggcttga
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