Candidatus Peribacter riflensis: PeribacterA2_1016
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Entry
PeribacterA2_1016 CDS
T04147
Name
(GenBank) transcription-repair coupling factor (superfamily II helicase)
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
prf
Candidatus Peribacter riflensis
Pathway
prf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
prf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PeribacterA2_1016
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
prf03400
]
PeribacterA2_1016
Enzymes [BR:
prf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PeribacterA2_1016
DNA repair and recombination proteins [BR:
prf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PeribacterA2_1016
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
CarD_TRCF_RID
UvrB_inter
ResIII
AAA_22
AAA_16
RecG_dom3_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ALM10374
UniProt:
A0A0S1SRP5
LinkDB
All DBs
Position
complement(1070876..1074055)
Genome browser
AA seq
1059 aa
AA seq
DB search
MQPSLLLGRDTHRELTELLKKERRLVISGASNETAKALLLSLLLEQNSQRTLLVTGREEE
AEALQHWLQFFGQTTHILHPIENEEGEVLPDALQTFLQFTQGEESKNGIFLCSRETWDQS
FPRFAELLDRMLTLTLGKEINFTKFVEDLIERGYQHGEDLYLSPGEYRRIGDVFDIFPIQ
SSHPYRVSFDMDRVEKILTVDPIDLSKTEDGGKEMQIFPLLYEETDLLVRQIPAKALLVI
DDQDDVEFPMTATALRFTPFPETDDHHAHLRYLSVLKFYTLIDFLNDVKDKLTQKWAIFV
VTKRIEELKGICKEEHVSCSTDLERTPGTLTLIGAGEDELLPHSLQNPDLKFALLTDREI
FSLRKAGKQRSIQKLALDFITSLVPGDYVVHMEHGIGHFEGMTQKEVDGTLREYLELTYA
EGDKLFVPVDQADKLSKFVYEEGQEPILTRLGTNEWKRVMKKTKEETELIAKELLLLYAK
RAKAKGYGFGEDTDIQRKFEESFPYEETPGQRKAIEDLKTDMESGHPMDRLICGDVGFGK
TEVAMRAAFKAVQSGKQVAVVAPITILADQHYHNFRERMAPFNVRIEMLSRFRSAKEQRE
TLERLKKGEVDLVIGTHRLLQEDVHFHNLGLVIVDEEQRFGVKQKEKFKEMRASVDILTL
TATPIPRTLNLGLHKLRDITTITTPPPGRLPIITEVRRYSDSLIRHAIIFELKRKGQAFI
LHNRVETIDAFADKLRMLIPEAKFIVAHGQLKADELEERVLEFKKGNVDVLVSSTIIENG
IDLPRANTLVVDEAEHFGLAQLYQLRGRVGRSKVQAYAYFLYHGQKLQDDAKKRLRAIVE
ACELGSGFQVAMRDLEIRGAGEILGASQSGTMNTVGVSHYLRMLKGAVEEMKAGEKGEVE
EEISAEILLPVEAMLPSFYVTDEQERISVYQKLAGSEDASILKEFEEDLRDEFGEPPTPV
KNLFAILRLKLACRHAGVIRIKMEHEAREDFIVLTLAGRVTAKEIMQLLKENPQWKISGS
NLHLPFAELTRRAGAEESQWLLELTKEVEMLGGKSKEKK
NT seq
3180 nt
NT seq
+upstream
nt +downstream
nt
atgcaaccttctctcctccttgggagagacactcaccgggaactgaccgagcttctgaag
aaggagcggcgtcttgtgatctccggggccagcaatgagaccgcaaaagcccttcttctc
tctcttctcctcgagcagaattcccagcgcacgctcctggtcaccgggcgggaggaagaa
gcggaggccctgcagcactggctgcaattcttcgggcagacgacgcacattctccatccc
attgaaaatgaggagggggaagtattgccagatgctctgcaaacattcctgcagttcacg
cagggggaggaatcgaagaatgggattttcctctgctcgcgtgaaacgtgggatcagtcg
tttccgcgcttcgccgagctcctggatcgcatgcttacgctcacgctcggcaaagaaatc
aattttacgaaattcgtggaggatctgatcgaacgcggataccagcatggggaggatctg
tatctttctcccggtgaataccggcgcattggcgatgttttcgatatcttcccgatccag
tccagccacccctatcgtgtttccttcgacatggatcgggtggaaaaaattcttaccgtt
gatcccattgatctttcgaaaacggaggacggaggtaaagagatgcagatctttccgttg
ctctacgaagaaacagatcttctcgtccgccagattcccgcgaaagcgcttctggtgatt
gatgatcaggatgatgtggaatttcccatgacagcgacagccctgcgcttcacgcctttt
cctgaaaccgacgatcaccacgcgcacctgcgctacctttctgttctgaaattctacaca
ctcatcgattttctcaatgacgtcaaagacaagctcacgcagaaatgggcgattttcgtc
gtcaccaagcgcatcgaggagcttaagggtatttgcaaagaggagcatgtgtcctgttcg
acggatctggagcgtactccgggcactcttaccctcatcggtgccggagaagacgaactg
ctcccccactcccttcagaatcccgatttgaaattcgctctgctcaccgatcgtgaaatt
ttctcactgagaaaggcgggcaagcagcgcagcattcagaaattggccctcgattttatc
acctcgctcgttcccggtgattacgtcgtgcacatggagcacggcatcgggcacttcgaa
gggatgacgcagaaagaagtggatggaacgctgcgcgaatatctggaactgacgtatgcc
gagggcgacaagctcttcgtgccggtggatcaggccgacaagctcagtaaattcgtctac
gaagaggggcaggagcccattctcacgcgtctcggaaccaatgagtggaaacgcgtgatg
aagaagacgaaggaggaaaccgaactgatcgccaaagaacttctgttgctctacgccaag
cgtgccaaggccaaaggatacggctttggcgaggataccgatatccagcgcaagtttgag
gagtcgttcccgtacgaagaaacgccgggccagcgcaaggccatcgaagacctgaaaacg
gatatggagagcgggcaccccatggatcgcctcatctgcggagacgtgggattcggcaag
accgaagtggccatgcgggccgcgttcaaggccgtgcagagtggcaagcaggtggccgtg
gtcgcgccgatcaccattctggccgatcagcactaccacaacttccgcgagcgcatggca
ccgttcaatgtgcgcatcgaaatgctcagccggttccgctcggccaaggaacagcgtgaa
acactcgaaagactgaagaagggggaagtggatctcgtcatcggcacgcaccggctgctg
caggaggacgtgcactttcataatctggggctcgtgattgtggatgaggaacagcgtttc
ggcgtgaagcagaaagagaagttcaaagagatgcgcgcctcggtggatattctcaccctc
acggccacccccatcccgcgcacgctgaatctggggctgcacaagcttcgcgacatcacc
accatcaccacgccacccccgggcaggctgccgatcatcaccgaggtccggcgctattcc
gattcgctcatccggcatgcgatcatcttcgaattaaagcggaaggggcaggccttcatc
ctccacaatcgtgtagagacgatcgatgcttttgccgacaagctccgtatgctgattcct
gaggcgaagttcattgtggcgcacgggcagctgaaagcggacgagctcgaagagcgcgtg
ctggaattcaagaagggcaacgtggatgtgctcgtgagttccaccatcatcgagaatggc
atcgaccttccgcgcgccaatactcttgtggtggatgaggcggaacatttcgggcttgcc
cagctctaccagctcagaggtcgtgtggggcgcagcaaggtgcaggcgtacgcctatttc
ctctatcacgggcagaagctgcaagacgatgcgaagaagcgcctgagggcaattgtggag
gcctgtgagctcggtagcggattccaggtggccatgcgcgatctcgagatccgcggagcc
ggcgagattctgggggccagccaatccggcaccatgaacaccgtgggtgtcagccactac
ctgcgcatgctcaaaggggccgtggaggaaatgaaggccggcgagaagggcgaggtggaa
gaggagatctcggccgagatcctgcttcccgtggaggcgatgcttccctccttctacgtc
accgacgaacaggaacgcatttcggtgtaccagaagcttgccggcagtgaggatgcctcc
attctgaaggaattcgaagaagacctgcgtgacgaattcggtgagccgccgactcctgtg
aaaaatttattcgctattctccggctcaaactcgcgtgtcgtcatgcaggggtcatccgc
atcaaaatggaacatgaggcgcgggaagatttcatcgtcctcacgctggcgggccgcgtg
acggccaaagagatcatgcagctgctcaaagagaatccgcagtggaagatctcgggcagt
aatctgcacctgccgttcgcggagctgaccaggagagcgggggccgaggagtcgcagtgg
cttctggaactcacaaaggaggtggaaatgctcggcggcaagtcaaaagagaagaagtag
DBGET
integrated database retrieval system
