Paenibacillus riograndensis: PRIO_1233
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Entry
PRIO_1233 CDS
T03849
Name
(GenBank) DNA polymerase LigD, polymerase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pri
Paenibacillus riograndensis
Pathway
pri03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PRIO_1233
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pri03400
]
PRIO_1233
Enzymes [BR:
pri01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PRIO_1233
DNA repair and recombination proteins [BR:
pri03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PRIO_1233
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Dis3l2_C_term
Motif
Other DBs
NCBI-ProteinID:
CQR53203
UniProt:
A0A0E4H8L6
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Position
I:complement(1415604..1416488)
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AA seq
294 aa
AA seq
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MPAAVKGSITVDGQEIIITNPDKPLWPEVGITKRIYLQKLAALSPYLLRYSRDRLLTVIR
YPHGVPGMSFYQKNAPEPLPDFVRTATHDNITYIVLQGLPELLWLGNLAALEFHPSLHYV
GSTLPCEWMIDLDPSLEVEPRIMEAAAVVGEVLQSLGIASVPKTSGATGVQIIVPIRPGV
TFDGLRRIGHFVGRYVTEKRPDLFTLERLKKNRGDKIYFDYLQHYGGKTLAAPYTPRARP
LATVSTPLLWEEVQHNVSPADFHLLNIEERLSIMGDLIAKVPPQPVEALIPKLP
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
atgccggcagccgtcaaaggctccatcaccgtcgatgggcaagagattatcatcaccaat
cccgacaagccgttatggcctgaagtgggcattaccaaacggatttacctgcaaaagctg
gccgccctctccccttatctgctgcgctattcccgtgaccggctgctgactgtaatccgc
tatccgcacggcgttcccggcatgtccttttatcagaaaaatgcgccggagcctttgccg
gattttgtgcggacagcaactcacgacaacattacctatattgtcctgcaaggactgccc
gagctgctctggctggggaacttagccgcgctggagtttcatccctcactgcattatgtc
ggcagcactttgccctgcgaatggatgattgacctggacccgtcccttgaggtcgagccg
cggattatggaagcggcggctgttgtaggggaggtactgcaatcattggggattgcctca
gtccccaaaacctccggtgcaaccggagtgcagattatcgttccgatccggcccggagtc
actttcgatggcctgcgccggatcgggcattttgtcggcaggtatgtaactgagaaacgt
cccgatctgttcacgctggagcggttgaagaagaaccggggcgacaaaatttattttgat
taccttcagcattacgggggcaaaacgctcgccgctccgtacacgccccgtgcccggccg
ctggctaccgtctccactcctcttttgtgggaagaggttcagcacaatgtttcgcctgcc
gatttccatctgctcaacattgaggaacgcctgagcatcatgggcgatctgatcgccaag
gtgccgccgcagccggtggaggctctgatccccaaacttccttga
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