Paenibacillus riograndensis: PRIO_2554
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Entry
PRIO_2554 CDS
T03849
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pri
Paenibacillus riograndensis
Pathway
pri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PRIO_2554 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pri03019
]
PRIO_2554 (cshA)
03009 Ribosome biogenesis [BR:
pri03009
]
PRIO_2554 (cshA)
Enzymes [BR:
pri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PRIO_2554 (cshA)
Messenger RNA biogenesis [BR:
pri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PRIO_2554 (cshA)
Ribosome biogenesis [BR:
pri03009
]
Prokaryotic type
rRNA helicases
PRIO_2554 (cshA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
CMS1
AAA_19
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
CQR54959
UniProt:
A0A0E4H990
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All DBs
Position
I:3105782..3107413
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AA seq
543 aa
AA seq
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MKTFAEFGLEPKVLQAITELGFEEATPIQEQAIPIALTGSDLIGQAQTGTGKTAAFGIPL
ISKIAREEEKILALVMTPTRELAIQVAEEIGKLTRFKGLRSLAIYGGQDIGRQIRGLKKK
PQIIIGTPGRLLDHINRKTIRLDDVQTIVLDEADEMLDMGFMEDIQTILKLVPEERQTML
FSATMPPNIQRLAQQFLKNPQHVSVIPKQISAPLIDQAYIEVPERQKFEALSRLIDMESP
DLAIVFGRTKRRVDELAEGLQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLVATDVA
ARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGTAWSFVTPREMDHLHLIERVTR
HRITRKPLPTMAEAIEGKQRITAERLLAMVEGGGELNEYKGIAIQLLEQYDSVQLLTAAM
KLLTGDTKDAQVELTPEDPIRVKRRGGKNDIRSGRKPNGGYGGNRTGSGSGGGYRGNRDN
ASGGSRGGYSSGYGSGGYGGGYKGNRDSGAGRDGGAGRSGDRKPYTRPSSTSTRPAKRDD
YDI
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaacattcgcagaattcggcctggagccaaaagtgcttcaagcaatcacagagcta
ggatttgaggaagcaacacccattcaggagcaggcgattccgattgcattgaccggatcg
gatcttatcggccaggcgcagaccggtacaggtaaaaccgctgctttcgggattcccctc
atctccaagatcgcccgggaagaagagaagatccttgcacttgtcatgacaccgacacgt
gagcttgcgattcaggtagctgaggaaatcggcaaattgacccgcttcaaaggactccgc
tccctggccatttacggcgggcaggatatcggccgccagatccgcggcctgaagaagaaa
ccgcagatcatcatcggtacccctggacgccttctggaccacattaaccgcaaaaccatc
cgcctcgatgatgtccagaccattgtgctggacgaagctgacgaaatgctggatatgggc
ttcatggaagacatccagacgattctcaagcttgtaccggaagaacgccagaccatgctg
ttctcagctacaatgcctcctaacattcaacgtcttgcccagcagttcctgaagaatccg
cagcatgtttccgtaatcccgaaacaaatcagcgcacctctgattgaccaggcttatatt
gaggttcctgagcgccagaagttcgaagctctgagccgcctgattgacatggaatcccct
gatttggcgatcgtattcggccgcaccaaacgccgggttgacgagctggctgaaggattg
caaaaacgcggttattccgcagacggactgcatggcgacttgtcccagaaccagcgggat
gccgtaatgcgcaaattccgcgacggcagcattgatgtgcttgttgctacagacgttgca
gcccgcggactcgacgtttccggtgtaactcatgttatcaactttgacctgccgcaggat
cctgagagttatgtacaccgtatcggccgtacaggccgtgcgggcaaggaagggactgcc
tggtctttcgtgactccccgcgagatggatcacctgcacctgattgaacgtgtcacacgt
caccgtattacccgcaaaccgcttccgacaatggctgaggctatcgaaggcaagcagcgc
attactgctgaacgtttgctggcaatggttgaaggcggcggcgagctgaacgaatacaaa
ggcatcgccattcagcttctggagcaatatgattccgttcagctgctgactgcggctatg
aagctgcttaccggcgacaccaaggatgcccaggttgaattgacaccggaagatccgatc
cgtgtcaaacgccgtggcggcaaaaatgacatccgcagcggacgcaagccgaacggcgga
tatggcggcaaccgcacaggttccggaagcggcggcggataccgtggcaaccgtgacaat
gcaagcggcggcagccgtggcggttacagcagcgggtacggcagcggcggatatggcggc
ggctacaaaggcaaccgtgattccggtgcaggccgtgatggcggtgccggacgcagcggg
gaccgcaaaccctacacacgtccaagcagcacaagcacacgtccggctaaacgcgatgat
tacgatatctaa
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