Pedobacter riviphilus: H9N25_07075
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Entry
H9N25_07075 CDS
T08657
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
prk
Pedobacter riviphilus
Pathway
prk03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
prk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
H9N25_07075 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
prk03400
]
H9N25_07075 (ligD)
Enzymes [BR:
prk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
H9N25_07075 (ligD)
DNA repair and recombination proteins [BR:
prk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
H9N25_07075 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
GH3
Motif
Other DBs
NCBI-ProteinID:
QNR86166
LinkDB
All DBs
Position
1746405..1749101
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AA seq
898 aa
AA seq
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MSLKKYVSKRDFSKTTEPKSGKSSDRNKLHFVIQKHDASRLHYDFRLEMEGVLKSWAVPK
GPSTDPKTKRLAMMVEDHPYDYKDFEGIIPQGEYGGGTVIVWDEGTYEPIEEIKGKKAQE
KHLLNQLKDGSLKFKLNGEKLHGEFALVKTHGMGENGWLLIKHKDNYASTKDITKEDKSV
LSGKTIEKMEKTSDKVWKAGKEQDLKTEKKSLTQKVKKEIKPGGDEVTVDIKNILKKAPK
ITIPKGIKPMLATLVDEPFDDANWQYEVKWDGYRALAFINKGKVDLLSRNNKSFNEKFYP
IYDLLLGWKINAVIDGEILVLNNKGISSFGSLQNWRSEADGELVFYVFDILWYEGKNLME
LPLYQRQAILNEVLPINDDQVRLGKVFKASGVDFFDAAERMGLEGIIAKKIDSTYTPSYR
SKEWLKIKVQKRQEVVIAGFTKNADTTKPFSSLLLGVYEKEKLQYVGKVGTGFSDKLQKT
MMEQFKPIIVDKSPFEIIPDVNKPSRFRPNPPKAKATWLKPELVCEVAFAEVTSDGVFRH
PSFQGMREDKSAKEVVREMEMPIEKIVDDAKEQNPHAQAIKAPEGKKTKTLLNPKDETQV
RKIKGHQLKFTNLSKVYWPEDKVTKRDMFNYYYQVAEYILPYLKDRPQSLNRFPGGIHGP
SFYQKDVKGKAPDWAETFPYENGEGEKKEYLVGTDEASLLWMASLGCIEMNPWFSRVQKP
DYPDYCVIDLDPDKHTFDQVVEAALETKKVLDAINVPSYCKTSGSTGMHIYIPLNAKYNY
EQSQMFAKIVVNLVHNQIPEYTSLERMIAARKGKMYLDFLQNRPGATIAGPYSLRPKIGA
TVSMPLHWDEVKPGLKMKDFNIFNTIDRLKVEGDLFKEVLGKGIDLTKAIDKAKSVFG
NT seq
2697 nt
NT seq
+upstream
nt +downstream
nt
atgagtctgaaaaagtatgtttccaaacgcgatttctcaaaaactaccgaaccaaaatcg
ggtaaaagcagcgatcgcaataaattacattttgtaatccaaaaacacgatgcttcgagg
ttacactacgatttcagactcgaaatggaaggtgttctaaaaagctgggctgtaccgaaa
ggaccgtcaaccgatcctaaaaccaaacgcttggctatgatggtagaagatcatccatac
gattacaaagattttgaaggcattatcccacagggcgaatatggcggcggaacagtaatt
gtatgggatgaaggaacttatgagcctatagaagagattaaaggcaaaaaagcgcaggaa
aaacatttattaaaccaattaaaagatggttctttaaaattcaagttaaacggagaaaag
ctacatggtgagtttgcacttgttaaaacacatggtatgggtgaaaatggctggctgtta
atcaaacataaagacaattacgcgtctacaaaagacattaccaaagaagataaatctgtg
ctttctggaaaaactattgaaaagatggaaaaaacatccgataaggtttggaaagcagga
aaagagcaggacttaaaaactgaaaaaaaaagcctgacgcaaaaagtaaagaaggaaatc
aagcctggtggcgatgaagtaaccgtagacataaaaaatatattaaaaaaagcacctaaa
attactattccaaagggcataaaaccgatgttggccacgctggtcgacgaacctttcgac
gatgcaaactggcagtatgaagtaaaatgggatggttatcgggcgctggcatttatcaat
aaaggaaaggttgacttgttatcaagaaataataaatcctttaacgaaaaattctatccc
atctacgatctgcttttgggttggaaaataaatgcggtaattgatggtgaaattttggtg
ttaaataacaaaggtatatctagttttggttcactgcagaattggagaagcgaagcagat
ggagaactcgttttttatgtgttcgatatcctctggtacgaaggtaagaacctaatggag
cttcctctttatcagcgccaagccatattaaatgaagttctgccaattaatgatgaccag
gtacgcttagggaaagttttcaaagccagtggtgtcgatttttttgatgcagcagaaagg
atgggcctggaggggattattgcaaaaaaaatagatagcacctataccccaagttataga
tcaaaagagtggcttaaaattaaggtgcagaaacggcaagaagtagttattgctggtttt
accaaaaatgctgatactacgaaacctttcagctctttgctcttgggggtgtacgagaag
gaaaaattacaatatgtaggcaaagtaggtacaggattctcagataaacttcaaaaaaca
atgatggagcagtttaagcctattattgtggataaaagccccttcgaaattatacccgat
gtaaataaaccttcgcgcttcaggccaaatccaccaaaggcaaaagcaacctggttaaag
ccagaattggtatgcgaagttgcttttgctgaagtaactagtgatggcgtttttcgtcac
ccttcttttcaggggatgcgtgaagataaaagcgctaaagaagttgttagagaaatggaa
atgccaatagaaaaaattgttgacgatgctaaagagcaaaatccacacgcacaggcaata
aaagcaccagaaggtaaaaaaactaaaactttgctgaacccgaaagatgaaacacaggtg
aggaaaataaaaggccaccaacttaaatttaccaacctgagtaaagtatattggcctgaa
gataaagtaaccaaaagggatatgttcaactactattaccaggttgctgaatatatttta
ccttacctgaaagaccgtccgcaatcgcttaaccgttttcctggcggaatacatggccct
agtttttaccaaaaagatgtaaaaggaaaagcaccagattgggccgaaacttttccttat
gaaaatggcgaaggcgaaaaaaaagaatacctggttggcacagatgaagcttccttactc
tggatggccagtttaggttgcatagaaatgaatccatggtttagccgggtacaaaagccc
gattatcccgattactgtgtaattgatttagatcctgataaacataccttcgaccaggtg
gttgaagctgcgctggaaactaaaaaagtattagatgccataaacgttccaagttattgt
aaaacatcaggttcaaccgggatgcatatttacattcccttaaatgccaagtataattat
gagcaaagccagatgtttgccaaaatagtagttaacctggtgcacaatcaaatacctgaa
tatacctcacttgagcgtatgatagctgcgagaaaaggaaagatgtacctcgatttttta
cagaataggccaggggcaaccatagccgggccttattcgttacggccaaaaattggtgca
accgtatcaatgcccctgcattgggatgaagttaaacctggcttaaaaatgaaagatttc
aatatttttaataccatagatcgcttaaaagttgaaggtgatctgtttaaagaggtattg
ggcaagggaatcgatttaacaaaagcgatcgataaagctaaaagtgtttttggataa
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