Pedobacter riviphilus: H9N25_20110
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Entry
H9N25_20110 CDS
T08657
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
prk
Pedobacter riviphilus
Pathway
prk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
prk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
H9N25_20110 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
prk03400
]
H9N25_20110 (mfd)
Enzymes [BR:
prk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
H9N25_20110 (mfd)
DNA repair and recombination proteins [BR:
prk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
H9N25_20110 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QNR84185
LinkDB
All DBs
Position
4892560..4895898
Genome browser
AA seq
1112 aa
AA seq
DB search
MNIRDLINRYKTDDRVTQFTKALNSTKNPKIQLKGLVGSADAIVALSSYFLLHKPLLFVL
PDREEAAYFQSDLESALEKQVLLFPSSYRKSFDFTQVDTANVLARAEVLNELNHDSEYGK
IVVSYPEAIAEKVIDRSALEKNTLEISLGAKLGIDFINEFLIDYDFDRRDFVYEPGQFSI
RGGIVDIFSFSSDLPYRIEFFGDEVESIRSFEIESQLSVADVKSLTIVPNVQAKFLTESN
ISILDYIDQDTQLWFKDVEFTLDIVKAGFKKAVELWKALPAADKSQNPEWIDPKFAFTDE
KLLGDHLQDFPIIEFGKQFFYKTDNRFEFETKPQPSFNKDFNLLIHNLKENEKEGIVNFI
FTDSPKQIERLYAILEDIDKTAKFTPINSMLREGFVDPQIQTAFYTDHQIFDRYYKYKLK
KGYQKSQAITLKDLRELKSGDYVTHIDHGIGKYAGLEKVEVNGKTQEMIRLIYADNDLLY
VNINSLNRIAKYSGKESGVPKMNKLGTDAWDKLKKTTKKKVKDIARDLIKLYALRKTQAG
TAFSPDSYLQTELEASFIYEDTPDQLKATQDVKKDMESPHPMDRLVCGDVGFGKTEIAVR
AAFKAVAEGKQAAVLVPTTILALQHFKTFSSRLKDFPVTVDYINRFKTSKQIKDTLAEAA
AGKVDILIGTHRLLSKDVKFKDLGIMIIDEEQKFGVTAKERLKAVRVNVDTLTLTATPIP
RTLHFSLMGARDLSIISTPPPNRQPVSTELHVFNDKLIQEAVQFELDRSGQVFFIHNRVN
DLMQLGGLIQKLVPKARIGIAHGQLDGDQLEDVMLDFINGEKDVLVATTIIEAGLDIPNA
NTIIINHAHMFGLSDLHQMRGRVGRSNKKAFCYLLSPPLSTLTSEARKRLSAIEEFSDLG
SGFNVAMRDLDIRGSGNLLGAEQSGFIAEIGFEMYHKILDEAIQELKEAEFKGLFENEPA
RPFVGFTQVDTDLELYIPDAYITNITERYNLYTELSKLDNEAELAIFEKHLADRFGPVPP
QVKTMLSVVRLQWLGKKLGFEKISFKKNSLRGYFLSDKQSAYFDSNTFTKILTFAQNHPR
MCNLKEVKNTLRIAFDNISTVEEAIQTLELID
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
ttgaacattcgcgatttaataaacagatacaaaaccgacgatagggtaactcaatttacc
aaagcgttgaacagcactaaaaacccaaagatacaattaaagggattggtgggttcggct
gatgctattgttgccctttcttcttatttcctattacacaagcccttactgttcgttttg
ccagaccgggaagaagccgcatattttcagtctgacctggaaagcgcgctcgaaaagcag
gttttattattcccttcctcgtaccgcaaatctttcgattttacgcaggtagatacagca
aacgtactggcccgtgcagaggtactgaacgaattgaatcacgattcggagtatggcaaa
attgtagtttcttaccccgaagccattgccgaaaaggtgattgaccgctctgctttagaa
aaaaacactttagaaatcagtttgggagccaagttgggcatcgattttattaacgaattt
ttaattgattacgatttcgaccgaagagactttgtttacgaaccagggcaattttctatc
cgtggtggcattgtagatatattttctttctcttctgatttgccttaccgcattgagttt
tttggtgatgaagtagaaagtatcagaagttttgaaattgaaagtcagctttcggttgcc
gatgttaaatcgcttaccattgtacctaatgttcaggcaaaatttttaacagaaagcaat
atcagcatcctcgattatatcgaccaggatacacaactctggtttaaggatgtagagttt
accctcgatattgttaaagctggctttaaaaaggctgttgaactgtggaaagcgctacca
gcggcagataaaagccaaaacccagaatggattgatccgaaatttgcctttactgacgaa
aagttactgggcgatcatcttcaggattttccaatcatcgaattcgggaagcagtttttt
tataaaacagacaaccgctttgaatttgaaaccaagccacagccttcatttaacaaagat
tttaatctccttatccataaccttaaggaaaacgaaaaagaaggcattgttaattttatt
tttaccgattcaccaaaacagattgagcgtttatatgccattttagaggatattgataaa
acagccaagtttacaccgatcaatagcatgctgcgcgaaggttttgtagatccgcagatt
caaacggcattttacaccgatcaccagattttcgatcgatattacaaatacaaacttaaa
aaaggctatcagaaaagccaggccattaccctgaaagatttaagggaacttaaatcaggt
gattatgttacccacatcgaccatgggatcggaaagtatgccggattggaaaaagtagaa
gttaacggcaaaacccaggagatgatccgtttaatttatgcagataacgacctactttat
gtaaacatcaactcgttaaaccgcattgccaaatatagcggtaaggaaagcggagtgcct
aagatgaataaattgggtactgatgcctgggacaagctaaaaaaaactactaaaaaaaaa
gttaaagatatcgcccgggacctgatcaagctctatgctttgcgcaaaacccaggcagga
accgcgttttctccagatagttatttacaaacagaattggaggcttcttttatttacgaa
gatacacccgatcagttaaaggctacccaagacgtgaaaaaggatatggaatcgccacat
ccaatggaccgtttagtgtgtggtgatgtgggcttcggaaaaacagagattgccgtacgc
gcggcatttaaagcagtagcagaaggaaaacaagcggcggttctggtaccaacaactatt
ttggccttacagcatttcaaaactttttcttcacgcttaaaagatttcccggttaccgtt
gattacattaaccgttttaaaaccagtaaacagattaaggatacattggccgaagcagct
gcaggcaaagttgatattttgatcggcacacaccgtttgctgagcaaggatgtaaagttt
aaggatctcggcatcatgattattgatgaggagcagaaatttggcgttactgcaaaagaa
aggctaaaagcggttagggtaaatgttgatactttaacccttacagcaactccgatcccg
agaacgctgcatttctctttaatgggcgcaagagatttatccattatcagcacgccaccg
ccaaaccgccagccggttagtaccgaattacatgtttttaatgataaactgattcaagag
gccgttcagttcgaattagaccgcagcggacaggttttctttatccataaccgcgtaaac
gacctgatgcaattgggtggcttaatccagaaactggttccaaaagcaagaatcggtatt
gcgcatggccaactagatggcgatcaactggaagatgtaatgctcgatttcattaatgga
gaaaaagatgttctggtagccaccacgattatagaagcgggtttagatattccgaatgcc
aataccatcatcattaaccatgcacatatgtttggtttgagcgatttgcaccagatgcgt
ggccgggtaggcaggagcaacaaaaaagctttctgttatttactttctccacccttatct
actttaacttctgaagcacggaaacgtttaagtgctattgaagagttttctgacttagga
agcggttttaatgtagctatgcgcgatttggatatccgtggaagtggaaatttattgggt
gccgagcagagtggtttcattgctgaaattggttttgaaatgtaccacaaaatattggat
gaggctattcaggaactaaaagaagcagaatttaaaggcctcttcgaaaatgaacctgcc
cgtccgtttgtgggctttacacaggtagatacagaccttgaattgtatatccctgacgca
tacatcaccaatatcaccgagcgttacaatttatataccgagctttctaaacttgataac
gaagcagaattagccatttttgaaaaacatttggccgaccgtttcggtccggttccgccg
caagtaaaaacgatgctaagtgtggtgcgcttgcagtggctgggcaagaaactgggcttc
gagaaaatcagttttaagaaaaatagtttacgcgggtatttcttaagcgataaacaatcg
gcttatttcgattcgaatacctttaccaagattttaacttttgcgcagaaccacccgcgt
atgtgtaatttaaaagaagtaaaaaataccttaaggattgctttcgataacataagtact
gttgaagaagccattcaaactttagaacttattgactaa
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