Phodopus roborovskii (desert hamster): 127217190
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Entry
127217190 CDS
T08852
Symbol
Upf1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
prob
Phodopus roborovskii (desert hamster)
Pathway
prob03013
Nucleocytoplasmic transport
prob03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
127217190 (Upf1)
03015 mRNA surveillance pathway
127217190 (Upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prob03019
]
127217190 (Upf1)
Enzymes [BR:
prob01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
127217190 (Upf1)
5.6.2.5 RNA 5'-3' helicase
127217190 (Upf1)
Messenger RNA biogenesis [BR:
prob03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
127217190 (Upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
127217190 (Upf1)
BRITE hierarchy
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
127217190
NCBI-ProteinID:
XP_051034029
LinkDB
All DBs
Position
Unknown
AA seq
1130 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGAGGPGGA
GTGSAAGQLDAQVGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSY
CGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYN
CGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKI
PSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNI
FGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAFFTLPKTDSGNEDLVIIWLRDM
RLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNLTQRPDYGDEIAIELRSSVGAPVEVTHN
FQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVVIKCQLPKRFTAQGL
PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVD
QLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELS
SADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMV
PVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPAL
SAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRT
EAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDA
FQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHL
LSYYKEQKALVEGPLNNLRESLMQFSKPRKLVNTVNPGARFMTTAMYDAREAIIPGSVYD
RSSQGRPSNMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGR
GTPKSKTGRGGRQKNRFGLPGPSQTTLPNSQASQDVASQPFSQGALTQGYVSMSQPSQMS
QPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacggccccagctcgcagacgctcaccttcttggacactgaggag
gccgagctactcggcgccgacacccagggttccgagttcgagttcaccgacttcaccctt
cccagccagacgcagacgccccccggcggccccggtggcgcgggaggcccgggcggagcg
ggcacaggcagcgcggccggccagctcgacgcgcaagttggacctgagggcatcttgcag
aatggggctgtggatgacagtgtggccaagaccagccaactgctggctgagctgaacttt
gaggaagatgaagaagacacatactacaccaaggacctcccagtccacgcctgcagttac
tgcggaatccatgatcctgcgtgcgtggtttactgcaataccagcaaaaaatggttctgc
aacggccgaggaaatacttctggcagccacattgtcaatcacctggtgagggctaaatgc
aaggaggtgacactgcacaaggatggaccactgggcgagacagtgctggagtgctacaac
tgcggctgccgcaatgtcttcctgctgggcttcatccctgcaaaggctgactcagtggtg
gtgctgctgtgcaggcagccctgtgccagccagagcagcctcaaggacatcaactgggac
agctcccagtggcagcccctgatccaggaccggtgcttcctgtcatggctagttaagatt
ccctcagagcaggagcagctacgagctcggcagatcaccgcacagcagatcaacaagttg
gaggagctttggaaggaaaacccttcagccaccctggaggacctggagaagccaggcgtg
gatgaggagccgcagcatgtgctcctgcggtacgaggatgcttaccagtaccaaaacatc
tttgggcccctggtcaagcttgaggctgactacgacaagaagctgaaggagtcacagact
caagataacatcacggtcaggtgggacctgggcctgaataagaagagaatcgccttcttc
actttgcccaagactgactctggtaatgaggatttagtcataatttggttaagagatatg
cggctcatgcagggtgatgagatctgtctgcggtacaaaggagacctagcgcccctttgg
aaggggattggccacgtcatcaaggtccctgataacttaactcagcggccagattatggt
gatgagattgctattgagctccgaagcagcgtgggtgcacccgtggaggtgacccacaac
ttccaggtggattttgtgtggaagtcaacctcttttgataggatgcagagtgcactgaag
acctttgctgtggatgagacctctgtatcaggctacatctaccacaagttgctgggccat
gaggtggaggatgtggtcatcaagtgccagctgccaaagcgcttcacggctcaggggctt
cccgacctcaaccactctcaggtatacgctgtgaagactgtgctgcagagacctctcagc
ctcatccagggccctccaggcacaggcaagactgtgacgtctgccactatcgtctaccac
cttgctcggcagggcaatgggcctgtgctggtatgtgccccaagtaacatcgctgtggac
cagctcacagagaagatccaccagacaggactgaaggttgtacgtctctgtgccaaaagc
cgagaggccattgattctcccgtgtccttcttggctctgcacaaccagatcaggaacatg
gacagcatgcccgagctgcagaaactgcagcagctgaaggatgagacgggagaactgtca
tctgcagatgagaagcggtaccgggcgctcaaacgcacagccgagagagagctgctcatg
aacgcagatgtcatctgctgtacctgtgtgggtgctggtgacccaagactggccaagatg
cagttccgttccatcctcattgatgagagcacccaggccactgagcctgagtgcatggtg
cctgtggtccttggggccaagcagctgatcctcgtgggtgaccactgtcagctgggccca
gtggtgatgtgcaagaaggcagccaaggctggactgtcacagtcgctctttgagcgcctg
gtggtgctgggcatccggccgatccgcctgcaggtgcagtaccgcatgcaccccgcactc
agcgccttcccgtccaatatcttctacgagggatcattgcagaatggtgtcactgcagcg
gatcgtgtcaagaagggctttgatttccagtggccacagcctgacaagcccatgttcttc
tacgtgacacagggccaggaggagattgccagctctggcacgtcctacctcaacaggacg
gaggcagccaacgtggagaagataactacaaagctgctgaaggcaggtgccaagcctgac
cagattggcatcatcacaccctacgagggccagcgttcctacctggtacaatatatgcag
ttcagcggctccctgcacaccaagctctaccaggaagtggagattgctagtgtggacgcc
ttccagggccgggagaaggacttcatcatcctgtcctgcgtgcgcgccaatgagcaccag
ggcattgggttcctgaatgatccccgtcgtctcaatgtggccctcaccagagcaaggtat
ggcgtgatcattgtgggtaacccaaaggcgctgtcaaagcagcccctgtggaaccacctg
ctgagctactacaaggagcagaaggcgctggtggaagggccactcaacaacctgcgtgag
agcctcatgcagttcagcaagcctcgaaagcttgtcaacactgtcaacccgggggcccgc
ttcatgactacagccatgtatgatgcccgagaggccattatcccgggatctgtctatgac
cgcagcagccagggccggccgtcaaacatgtacttccagacccacgaccagattggcatg
atcagtgccggtcccagccatgtggctgccatgaacatccccattcccttcaacttggtc
atgcctcccatgccaccacctgggtactttggacaggccaacgggccggctgctggccgg
ggtaccccaaaaagcaagactggccgtggaggacgccagaagaaccgctttgggcttcct
gggcccagccagactacccttcccaacagccaggccagccaggacgtggcctcacaaccc
ttttcacagggtgccctcacacagggctatgtgtccatgagccagccctctcagatgagc
cagcctggcctttcccagccagaactgtcccaggacagctacctgggtgatgagtttaaa
tcacagattgatgtggcactctctcaagactccacataccagggagagcgggcataccag
catggcggggtcactgggctgtcccagtactag
DBGET
integrated database retrieval system
