Phodopus roborovskii (desert hamster): 127217414
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Entry
127217414 CDS
T08852
Symbol
Upf3b
Name
(RefSeq) regulator of nonsense transcripts 3B isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
prob
Phodopus roborovskii (desert hamster)
Pathway
prob03013
Nucleocytoplasmic transport
prob03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
127217414 (Upf3b)
03015 mRNA surveillance pathway
127217414 (Upf3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prob03019
]
127217414 (Upf3b)
Messenger RNA biogenesis [BR:
prob03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
127217414 (Upf3b)
mRNA cycle factors
P-body specific factors
127217414 (Upf3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
127217414
NCBI-ProteinID:
XP_051034354
LinkDB
All DBs
Position
Unknown
AA seq
483 aa
AA seq
DB search
MKEEKDHRPKEKRVTLLTPQGATGSCVGATAEGAKGEDKQDRSRDKKEALSKVVIRRLPP
TLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDILLFRDRFDGYVFL
DNKGQEYHAIVEFAPFQKAAKKKIKKRDTKVGTIDDDPEYRKFLESYATDNEKMTSTPET
LLEEIEAKNRELIAKRTTPLLSFLKNKQRMREEKREERRRREIERKRQREEERRKWKEEE
KRKRKDIEKLKKIERIPEREKIKDEPKIKVHRFLLQAVNQKNLLRKPEKGDEKELDRRDK
AKKMDKENLNEERASGQSFTLPKRSDIELKDEKPKRLDEETVRDYRDRDRDYERDQERMM
RERERLKRQEEERRRLQQKERYEKEKAFKRKEEEMRREKEALRDKGKKNENTESICISEK
NEKREEVIKRDRIRNKDRPAMQLYQPGARSRNRLCPPDDIKPGDLPLDKKESGISHRKEG
GEE
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaagagaaagatcacaggcctaaggagaagcgagtgaccctgttaacgcctcag
ggtgccacaggcagctgcgtcggagctactgccgaaggcgccaaaggggaagataagcaa
gatcgcagcagggacaagaaagaagctttgagcaaggtggtaattcgaagattacctccc
actttgaccaaggagcagcttcaggaacatcttcaacctatgcctgaacatgattatttt
gagtttttttctaatgatactagtctgtatcctcatatgtatgccagagcatatatcaac
tttaaaaaccaagaagacattcttttattcagggaccgatttgatggctatgtattcctt
gacaataaaggtcaggaatatcatgctatagtagaatttgcaccttttcaaaaagctgcg
aaaaagaagattaagaaaagagatacaaaagttgggactatcgatgatgatccagaatac
agaaaatttttggagagttatgccacagacaatgaaaaaatgacatctactccagagaca
ttgctggaggaaatagaagccaaaaatcgagaattaatagctaaaaggacaaccccactt
ttgagcttcctgaagaacaagcagagaatgagagaagaaaagagggaagaaaggaggaga
cgagaaatagaaaggaaaagacaaagagaagaagagagaagaaagtggaaagaagaggag
aaacgaaaaagaaaagacatagaaaagctaaagaagatagaaagaattccagaaagggaa
aaaataaaggatgaaccaaagattaaggtacacaggtttctgttacaagctgtgaatcag
aaaaatctgctcaggaaaccagaaaaaggagatgaaaaagaacttgatagaagagacaaa
gccaagaaaatggacaaagagaatctgaatgaagaaagagccagtgggcaaagttttact
ctgcccaagcgttctgatattgaactgaaggatgaaaagccaaagaggcttgatgaagag
actgtcagagattacagagacagggatcgggattatgaaagagatcaggagcgcatgatg
cgagaacgagagaggctgaagcggcaagaagaagaacgccggaggctgcagcagaaggag
cgctatgagaaagagaaggctttcaaacgaaaggaggaggaaatgaggagagagaaagaa
gcacttcgagataaaggaaagaagaatgagaatacagaatcaatatgcatctcagaaaaa
aatgaaaaaagagaggaagtgattaagagagatcgcataaggaacaaggatcgtccggca
atgcagctttaccaaccaggagctcgaagccgaaatcgactctgtccccctgacgacatc
aagcctggagatttaccactggacaaaaaggaaagtggtattagccatagaaaagaagga
ggagaggagtga
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