Phodopus roborovskii (desert hamster): 127227904
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Entry
127227904 CDS
T08852
Symbol
Pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
prob
Phodopus roborovskii (desert hamster)
Pathway
prob03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127227904 (Pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
prob03021
]
127227904 (Pcf11)
03019 Messenger RNA biogenesis [BR:
prob03019
]
127227904 (Pcf11)
Transcription machinery [BR:
prob03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
127227904 (Pcf11)
Messenger RNA biogenesis [BR:
prob03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
127227904 (Pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
CFIA_Pcf11
SHOCT
Motif
Other DBs
NCBI-GeneID:
127227904
NCBI-ProteinID:
XP_051048208
LinkDB
All DBs
Position
Unknown
AA seq
1855 aa
AA seq
DB search
MTEQSLTNWPMRTDRPLHRASEREVLRKPSRTEEEGGAWTSCGEPGAGPVTRAGQPIPPG
VSNGPAPLPHISPPLAHFARRSGWEHRHFRSWSRHCRRHFVSVEKEAPAVAGSGRRFPVR
LQRFFPEVPPGSSPIPPPRSACGEAAAARDPSEGRRGVERLQLRRRRTSEGGRGAMSEQT
PAEAGAAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEAQTAKA
PSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRSTWDEI
FPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEEPSTPGTVVSSPSI
SSPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLSVQQETA
NLGPGSAPSKLHVSQIPAMTVKTPHQVPVQPDKSRPGPSLQIQDLKGTNRDPRLNRMSQH
SSHGKEQSHRKEFVMNTLNQSDTKTSKTMPSEKLNSSKQEKSKSSERIAKKELDQLDSKS
KSKSKSPSPLKNKLSHPKDLKNQESESMRLSDMNKRDPRLKKHLQDKAEGKDEDVKEKRK
SAEKKDKEEHMKSSEHRLIGSRSKIINGIVQKQDMVTEELEKQGTKPGRSSTRKRSRSRS
PKSRSPIIHSPKRRDRRSPKRRQRSMSPTLAPKGGKMRQSGLKQSHMEEFPPPSREERNV
KRSTKQDVRDPRRLKKMDEERPQDTSSQHSMKSGAEPKENMESWPSSKSAKRWKSGWEEN
KSLQQGDDHSKPPHLRHRESWSSTKGILSPRTPKQQHRLSVDANLQIPKELTLASKRELL
QKTSERLASGEITQDEFLVVVHQIRQLFQYQEGKHRCNVRDSPTEENKGGLKKKPLLSDA
ELTYYEHKAKLKRTQVQHSFPRLDLLDPDIFDYPLTDALLSGIECEPSKSKHASRNSGAQ
FDRKEQFSERARRLSPISGSRTYAENLSPHEGRRRHDEQVSAKGVREEQRSPFNDRFPLK
RPRYEDSDKPFVDGPASRFAGLDTNQRLTALAEDRPLFDGPGRPSVTRDGPGKMIFEGPN
KLSPRIDGPPTPGSLRFDGSPGQMGGGGPMRFEGPQGQLGGGCPLRFEGPPGPVGTPLRF
EGPIGQGGGGGFRFESSPSLRFEGSAGGLRFEGPGGQPVGGLRFEGHRGQPVGGLRFDGP
HGQPVGSLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPGGGIRFEGPLLQQGVGM
RFEGPHGQSVAGLRFEGHNQLRFEGPHGQPGVGMRFEGPIVQQGGGMRFEGPVPGGGLRI
EGPLGQGGPRFEGCHSLRFDGQPGQPSLLPRFDGLHGQPGPRFERTGQPGPQRFDGPPGQ
QVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGTRFDNHPSQRLESVSFNQTGPYNDPPGN
AFNVPSQGLQFQRHEQIFDTPQGPNFNGPHGPGNQNFPNPLNRASGHYFDEKNLQSSQFG
NFGNLPTPMPVGNIQASQQVLTGVAQPVAFGQGQQFLPVPPQNPGAFIQNPSGGLPKAYP
DNHLSQVDVNELFSKLLKTGILKLSQPDSATAQVNEAVAQPPPEEEEDQNEDQDVPDLTN
FTIEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRSEKDVSRKVT
HRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQSVPAGPAGAV
ESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFDCTPSPSKTPVE
NPLNIMLNIVKNELQEPCESPQVKEEQIDAPPACSEETVATPTEIKTENDTVESV
NT seq
5568 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaacagtcccttacgaattggccaatgagaacagaccgtcctctgcaccgcgcc
tccgagcgggaggtgttgcgaaagcccagtcggacggaggaagaaggaggcgcctggacg
tcctgcggagagccgggggcggggcctgtgacacgcgcgggccagccaatcccgcctggt
gtttccaacggccccgcccctttaccgcacatttcccctcccctagctcatttcgcacga
cgcagcggttgggaacacagacattttcggagctggagccgccactgccgccgccatttt
gtgtctgtggagaaagaagccccggcggtggctggaagtggacggagattccccgtgagg
ctgcagcgtttcttccccgaggttccccctgggtcgtcccccattccccctccgcggtca
gcatgtggtgaagccgcagccgccagagacccgtcggaagggaggcggggtgtcgagcgg
cttcagcttcggcggcggcggacctcggaggggggccgcggcgcaatgtcagagcagacg
ccggccgaggccggggctgcgggggcccgggaggacgcctgtcgggattatcagtcgtcg
ctggaagacctgaccttcaatagcaaaccgcacatcaatatgctgaccattctagccgag
gagaacctgcccttcgccaaggagatcgtctctctcatcgaggcccaaaccgccaaggct
ccttcctcagagaagcttccagttatgtaccttatggattctatcgtgaaaaacgttgga
agagaatatcttactgcctttactaaaaatctagttgcaacatttatttgtgtgtttgaa
aaggtggatgaaaatactagaaaaagtttatttaaattacgttctacatgggatgaaata
ttccctttgaagaaactttatgccttggatgtcagagtcaattcattagatcctgcttgg
cctattaaacctctgccccctaatgtgaatacatctagcatccatgtgaatcccaaattt
ttaaataaatcgcctgaggagccttcaacacctggcacagtggtcagttcccccagtatt
tcatctcctccgattgtacctgatatacaaaagaatcttacccaagaacaactaataagg
caacagttacttgcaaaacaaaaacagttgttagaacttcagcagaaaaagctggagctt
gagttagaacaagctaaggcacaactggcagtatctcttagtgttcaacaagagacagcc
aacttgggtcctggatcagcaccgtctaaattacatgtttcacaaattcctgctatgaca
gttaaaactccccatcaggttcctgtgcaacctgacaaaagccgacccggtccatcttta
caaatccaggacttgaaaggaactaatcgagatccgcgtcttaacaggatgagccaacat
tcttctcatggcaaagaacagagtcataggaaggaatttgtaatgaacacattaaaccag
tctgatactaaaactagtaaaactatgccctctgaaaaactaaattcgtccaagcaagaa
aaaagtaaatcaagtgaaagaatagctaagaaagaacttgaccagttagattctaaatct
aaatctaaatctaaatcaccatcacctttgaaaaacaaattatcccacccaaaagacttg
aaaaatcaagaatccgaaagtatgagattgtctgatatgaacaagagagatccacgatta
aaaaaacatcttcaggataaagctgaaggtaaagatgaagatgtaaaagaaaagagaaaa
agtgcagaaaaaaaggataaagaggagcatatgaaatcatctgaacacagactgattgga
agtagaagtaaaatcataaatggcattgtccaaaaacaggacatggttacagaagaatta
gaaaaacaagggacaaaaccagggagatcaagtactcgaaagcgatcaagatcgaggtca
ccaaagtctcggtcaccaattatacattccccaaagagaagagataggcggtcacccaaa
cgaaggcaaagaagtatgtctccaactttggcccccaaaggtggaaagatgcgtcagtca
ggacttaaacaatcacatatggaagagttcccaccaccttccagggaagaaaggaatgtt
aagagaagtactaagcaggatgttcgagatcctagacgactgaaaaagatggatgaggaa
cgaccacaagatacttcaagtcaacattctatgaagtcaggtgctgaaccaaaggaaaat
atggagagttggccaagttccaagtctgctaaaagatggaaatctggttgggaagaaaat
aaaagcttacaacagggtgatgaccatagtaaacctcctcatctaaggcatagggaaagc
tggtcaagcactaaaggaatattgtcacctcgaaccccaaagcagcaacatcgattaagt
gtagatgccaatcttcagattcctaaagagttaacccttgcaagcaaaagagaattactt
caaaagacgagtgaacgtttagcttctggtgaaattacacaggatgagttccttgttgtt
gtgcatcaaattcgacagctatttcagtatcaagaaggtaaacatagatgcaatgtacgg
gatagtcctacagaagaaaataaaggtggattaaaaaagaaacctctcttatctgatgct
gaattaacctactatgaacataaagcaaaactgaaaaggacacaggttcagcattcattt
ccaagacttgatctcttagatcctgatatttttgactaccctttgactgatgccttgttg
tctggaatagaatgtgagccatccaaaagtaaacatgcaagtaggaatagtggagcacag
tttgacagaaaagaacaatttagtgaaagagcaagacgtctttctcctatatctgggagt
cgtacttatgctgagaatctttcaccccatgagggccggagaagacatgacgagcaagtc
tctgctaaaggtgtacgtgaggagcagagatctccattcaatgatcgttttccacttaag
cgacctagatatgaagattcagataaaccatttgtagatggcccagcctcaagatttgct
ggccttgatacaaatcagcggcttacagctttagctgaagaccgaccactatttgatgga
cctggtaggccatctgtgacgagagatggcccaggcaagatgatttttgaaggacctaat
aaattaagccctagaattgatggacctcctacaccaggttctcttcggtttgatgggtca
ccaggacaaatggggggaggaggccctatgagatttgaaggaccacaaggtcagttagga
ggtgggtgccctttgagatttgaaggtcctccaggaccagtgggaacacctctcaggttt
gaagggccaattggtcaaggaggaggaggtggttttcgatttgaaagttcacctagtctg
aggtttgagggatctgcaggtggtttgcgatttgaaggaccagggggtcagcctgtgggt
ggtctcaggtttgaaggacatcgtggtcaacctgtgggtggtctgaggtttgatggacct
catggacagcctgtgggcagtcttagatttgataaccctagaggtcagcctgtaggtgga
cttagatttgaggggggtcatggtccctcaggggctgctattaggtttgatgggcctcat
ggtcagccaggtggtggtatcagatttgagggccctttgttacagcaaggagttggaatg
aggtttgagggtccccatggtcagtctgtagctggtctgagatttgaaggacataatcaa
cttaggtttgagggaccacatggtcaaccaggggttgggatgaggtttgaaggacctata
gttcaacaaggaggtggaatgaggtttgagggtcctgtaccaggaggtggcctgagaatt
gaagggcctctgggtcaaggtggtcctagatttgaaggttgtcattctttaaggtttgat
ggacagccaggtcagccatcactcttgccaagatttgatggattacatggtcagccaggt
cctagatttgaaagaactggtcagccaggtccacagagatttgatgggccacctggacag
caggttcaaccaaggtttgatggtgtacctcaaagatttgatggaccacaacaccagcaa
gcatcaaggtttgatattcctcttggtctacaaggcacccgatttgacaatcatccttca
caaaggcttgaatcggtatctttcaatcagactggcccatataatgatccacctggcaat
gcttttaatgttccatctcaaggactacagttccaaagacatgaacaaatatttgataca
cctcaaggaccaaattttaatggacctcatggccctggaaaccagaatttcccaaatccc
cttaatagagcttcaggacattattttgatgaaaagaatcttcagagttctcagtttgga
aactttggcaatttacctactccgatgccagtaggaaatattcaggcgtctcagcaggtt
ctgactggtgttgctcagccagtagcgtttggccaaggacaacaatttttaccagttcct
ccacagaatcctggagcttttattcaaaatccttcaggcggtcttcctaaggcatatcct
gataatcatctcagtcaggtggatgtaaatgaattgttttcaaaactgctaaaaacagga
attctcaaattgtcacagcctgattcagctacagcacaagtaaatgaggctgttgctcag
cctccccctgaagaagaggaggatcagaatgaagatcaagatgttccagatcttactaac
tttacaattgaagaattgaagcaacgttatgacagtgttataaaccggctgtacactggg
attcagtgttactcttgtggaatgaggtttacaacatcccagacagatgtttatgcagat
cacttggactggcattatcggcaaaataggagtgagaaagatgttagcagaaaagtcact
catagacgttggtactacagtttaacagactggatagaatttgaagaaatagctgatttg
gaagaacgtgcaaaaagccagttctttgaaaaggttcatgaagaggttgtcctcaaaact
caggaggctgctaaagaaaaggagttccagagtgtacctgctggaccagctggagcagtt
gagagttgtgaaatctgtcaagaacaatttgaacagtactgggatgaagaggaggaggaa
tggcacttaaaaaatgctattagagtagacggaaagatttatcatccatcgtgttatgaa
gattatcaaaatacatcttcttttgattgtacaccatctcccagcaagacaccagttgaa
aaccctttgaacattatgttgaacattgtcaaaaacgaattgcaagaaccctgtgaaagt
ccccaagttaaggaagagcaaattgatgccccaccagcttgttcggaagaaactgtagca
acacccactgaaattaaaacagaaaatgacacagttgagtcagtttaa
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integrated database retrieval system
