Phodopus roborovskii (desert hamster): 127230127
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Entry
127230127 CDS
T08852
Symbol
Lmo7
Name
(RefSeq) LIM domain only protein 7 isoform X1
KO
K06084
F-box protein 20
Organism
prob
Phodopus roborovskii (desert hamster)
Pathway
prob04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
127230127 (Lmo7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
prob04121
]
127230127 (Lmo7)
Ubiquitin system [BR:
prob04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
SCF complex
Target recognizing subunit (F-box)
127230127 (Lmo7)
BRITE hierarchy
Motif
Pfam:
DUF4757
CH
LIM
PDZ
PDZ_2
PDZ_6
Motif
Other DBs
NCBI-GeneID:
127230127
NCBI-ProteinID:
XP_051051234
LinkDB
All DBs
Position
Unknown
AA seq
1700 aa
AA seq
DB search
MEGMEDAEADCSIAFAEAQRWVEAVTEKNFETKDFRASLENGVLLCDLINKLKPGIIRKI
NRLSTPIAGLDNINVFLKACEQIGLKEAQLFHPGDLQDLSNRVTVKQEETDRRLKNVLIT
LYWLGRKAQNNPYYDGPYLNLKAFETLLGQALTKALEESSCLKRSGRDSGYGDTWCPDRG
DFLAPPGSHRREDSFESLDSLGSKSLTSCSSDLTLRGGKEGFESDTDWEFTSKMQEYNKD
DMSYRRISAIEPKSAQPFNRFLPNKSKQPSYVPAPLRKKRPDKSEDNRRSWASPVYTETD
GTFSSNQRRTWGPKMERWHTVQETSASSCYLEEEEEKIMRIPNLVKDDLYVRKLSPVMPS
PGGSFDQFLPKCWTPEDMNWKKVKRETYKPWYKEFQGFSQFLLLQALQTYSDDILSSEPN
VKIDPTSGPRLITRRKILSHTPGYGADDLELPALDPDLENDDFFVRKTRAFHANPCVLRA
FEDFRRFSEPDDAFERDIILQCREGELVLPDLEKDDMIVRRIPAQKNEVPLSGAPDRYQP
VPFPEPWTLPPEIQAKFLCALERTRPPQEKSSSCRVLVPSYRQKRDDMLARKIQSWKLGT
AVPPTSFKPGPCSEADLQKWEAIREASRLRHRKRLMVERLFQKIYGENGSKSMSDVSAED
IQNLRQLRYEEMQKIKSQLKEQDQKWQDDLAKWKSRRKSYTSDLQKKKEEREEIEKQALE
KSDRSSKTFREMLQERESRNQNSTRRMYSSDDALVHDVLPPTMTLSETSYQSETLEDKTT
AYPAETSKEDCTTFANSQDSAAAEIQLPSHIPEEQQPSPVSVVEPHQAPVSAVEPHQGSL
PSVAQRPQRPGSLSFQQSPSTRGESTRISASLPRSYQRSDTARLTSVVTARPFGAQSRGI
SSLPRSYTMDDGWKYNGDIEVVKRAPQNLVKATAPKLGSTQLVLGSSSEREAATGEDVAS
MSSPTPTFSQDQAATSKAALSSMSGLDSVSDSGEERSSPPREVSRSQDQFSDMRISINQT
PGNKPDFGFTIKWDFSGISVASVEKGSPAEFSQLQVDDEILAINNTKFSYKDTKKWEETM
ANAQETGNLVMDVRRYGKSDWGRDQLSLPSIRHKTLNLTSVATKIIGSPETKWTDTTSGI
YITDKSSSLSVTTDFSESLQSPYTESKEINGIHEESSTFDSKASESISLRNLKRRSQFFE
QGSSNSVVPDLPVPALNAPSRWAWDQEEERNRQERWQKEQDRLLQEKYQREQEKLREEWQ
KAQQEAERENSKYLDEELMALTSNSISLTTREPVAATWEPTWSEGSKSSDREGTRAGEEE
KGQLEEDAVCEDLTWKLQEQLMLEQEKKRKEQKAQEEELRKQQEAEAQAQAEAEAKARAE
AQAQAEAQEQKRAETQKYQVERELETSVKIYQYRRPVDSYDTLKKEGESSGLLLSDRSKS
RSTTELNDAATEKNGSSKYSDRIGTTSFSQRSSRKDQGPSEAELERQQILQEMRKRTSLH
NDNSWIRQRSASVNKEPICLPGIMRRGESLDNLDSQRPSSWRQSPWHSQPAGVYASSSVQ
DFSRPPPQLLSTSNRAYMRNPSSAVLPPAGPGKTVIPGPAPGPPTSHSYSSSVSQPGSQL
RNRSVSGKRVCSYCNSILGKGAAMIIETLGLCYHLQCFKCVSCECDLGGSFSGAEVRIRN
NQLYCNDCYLRFKSGRPTAM
NT seq
5103 nt
NT seq
+upstream
nt +downstream
nt
atggaagggatggaggacgccgaggccgattgctcgattgcattcgcagaggctcagaga
tgggtggaggctgtgactgagaagaattttgaaacaaaggattttcgagcctctctagaa
aatggtgttctgttgtgtgatttgattaataagctcaaacctggcatcataaggaagatc
aatagactgtctacaccaatagcaggtttggataatataaacgtttttttgaaagcttgt
gaacagattggattgaaagaagcccagctttttcatcccggggatctacaggatttatca
aatcgagtcactgtcaagcaagaagagactgacaggagactgaaaaatgttttgataact
ttgtactggcttggaagaaaagcacaaaataacccctactatgatggtccctacctcaat
ctgaaagcttttgagactctgctaggacaagctttgactaaggcacttgaggagtctagc
tgcctgaaaagaagtggccgggacagtggctacggtgacacctggtgccctgaccgagga
gactttcttgcccctccaggcagccataggagggaagattcctttgaaagcttggactcc
ttggggtctaaatcactgaccagctgctcctcagatctcacccttagaggtgggaaggaa
ggtttcgaaagtgacacagattgggagtttacatccaaaatgcaggagtataacaaagat
gatatgtcctatcgaaggatttcagctattgaaccaaagtctgctcaaccattcaatcgc
ttcttgcctaacaaaagcaaacagccatcctacgtgccagcaccgttgagaaagaaaagg
ccagacaaaagcgaggataacagaagaagctgggcgagcccagtctacacagagacagat
ggaacattttcaagtaaccagaggaggacctggggtcccaagatggaacgctggcacaca
gtccaagaaacttctgcctcctcttgttatttggaagaggaggaagaaaagatcatgcgc
atccccaacctcgtgaaggatgatctctatgtgcgaaagctgagtccagtcatgccaagc
ccagggggttcttttgatcagtttctccccaaatgttggactcctgaagatatgaactgg
aaaaaagtaaagagagagacttataagccatggtataaggaatttcagggattcagtcag
tttttattgcttcaggcccttcaaacatactctgatgacatcttgtcttcggaaccaaat
gtcaaaatcgatcctacctctggcccaaggctcataactcgcagaaaaattctctctcac
acaccaggctatggagcagatgaccttgagctgccagccctggatcctgatttagaaaat
gatgatttctttgttagaaaaaccagggctttccatgcaaatccgtgtgtccttcgagcc
ttcgaagactttcgaaggttctccgagccagatgatgcttttgaacgagatataattttg
cagtgtcgggaaggtgagcttgtgcttccagatttagaaaaagatgacatgattgttcga
cggatcccagcacagaagaatgaagtgcccttgtctggggccccggatagataccagccg
gtccctttccctgaaccctggaccctgcctccggaaatccaagcgaaatttctctgtgcg
ctcgaaaggacacgcccaccccaagagaaaagcagtagctgtagagtcttagttccttcc
tatcgacagaagagagatgacatgttggctcgcaagatccagtcttggaagctggggact
gctgtgcctcccaccagcttcaagcctggaccctgcagcgaggctgacctacagaagtgg
gaggccatccgggaggccagcagacttaggcacaggaagcggctgatggttgagagactc
tttcaaaagatttatggtgagaatgggagcaagtccatgagcgatgtcagcgcagaggat
attcagaacctgcgacagttgcggtacgaggagatgcagaaaataaaatcccagctgaaa
gaacaagatcagaaatggcaggatgaccttgcaaaatggaaaagtaggcggaagagttac
acttcagatctgcagaagaagaaggaggagagggaagagattgaaaagcaggccctggag
aagtctgaccggagctccaagacctttagggaaatgctgcaggagagggaatctcgaaat
cagaattctacaaggaggatgtattcctccgatgacgccctggtccacgacgtgctccct
cctacaatgactctgtcagaaaccagctaccagagcgagacactggaagacaagacaaca
gcttatcctgccgagacgtccaaagaagattgcacaacttttgcaaacagtcaggacagt
gcagcagcagagattcagcttccttctcatattcctgaggagcagcagccgtcacccgtg
tctgttgtggaaccacaccaggcccccgtgtctgctgtggaaccgcaccaggggtctcta
ccctcggtagcacagcgcccacagcgcccaggctcgctctcttttcagcagtcgcctagt
acaagaggagagtcgactcggatttcagcttctctccctagaagttaccagagatccgat
acagccaggttaacatctgtggtcacagcgagaccttttggcgcgcagtcaaggggaatc
tcatcactgcccagatcctacacgatggatgatggctggaagtacaatggagatattgaa
gttgtcaagagagctccacagaatctggtcaaagccactgccccaaagcttggctccacc
cagttagttctgggctcatccagtgaaagggaggcagccacaggagaagatgtggcaagc
atgtcctctcccacacccaccttctcccaagaccaggcagctacttccaaagctgcactg
tcttccatgtctggtctggattcagtgtctgactctggagaagagagaagttcaccaccg
agggaggtttccaggtctcaggatcagttcagcgatatgagaatcagcataaaccagacg
cctgggaacaaacctgactttgggtttacaataaaatgggatttttctgggatctctgta
gcatcagttgaaaaaggtagcccagcagaattttctcagctgcaggtagatgatgaaatt
cttgccatcaataacaccaagttttcatacaaggatacaaaaaagtgggaggaaaccatg
gcaaatgcccaggaaactggaaacttagtgatggatgtcagacgctatggaaagtctgac
tggggcagagaccaactttccctgccatctatacggcataaaaccctcaatcttaccagt
gtggctaccaaaattataggttcacctgaaacaaagtggaccgatacaacttcagggatt
tacatcacggacaagtcttcaagtctgtcggtaaccactgatttttctgaaagccttcag
agtccttataccgaatctaaagaaatcaatggaattcatgaagaaagcagcacctttgat
tcaaaagcgtcagaatccatttctttgagaaatttaaaaaggcgatcacaattttttgaa
caagggagctccaattctgtggttcctgatcttccggttccagccctcaatgccccaagt
cgctgggcgtgggatcaagaggaggagagaaaccggcaggagaggtggcagaaggagcag
gaccgcctgcttcaggagaaataccagcgcgagcaagagaagctgagggaggagtggcag
aaagctcagcaggaggccgagagagagaactccaaatacttggatgaggagctgatggcc
ctaacctccaacagcatttctctgaccactcgggagcctgtggctgccacctgggaaccc
acctggagtgaagggtctaagtcttcagacagggaaggaactcgagcaggagaggaggag
aaggggcagctggaagaggatgctgtttgtgaggacctaacttggaagctgcaggaacag
ctcatgcttgagcaggagaagaaacggaaggaacaaaaagctcaggaagaagagcttcgg
aagcagcaggaggctgaggcccaggcccaggccgaggctgaggccaaggcccgtgcagag
gcccaggcccaggctgaggctcaagagcaaaaacgagctgaaacgcagaagtaccaggtg
gagagggagctcgaaacttcggtcaagatctaccagtaccggaggcctgttgattcctac
gataccctgaagaaagagggggaatcttcagggctgctccttagtgacaggagtaagtca
agatctactacggaactaaatgatgctgccacagagaaaaatggaagcagcaaatattca
gaccgaattgggactactagcttttcacaaaggagctccaggaaggaccagggcccctca
gaagcagagttggagagacagcaaatccttcaggaaatgaggaagagaacatctctccat
aacgacaacagctggatccgacagcgcagtgccagtgtgaacaaagaacccatctgcctg
cctgggatcatgagaagaggggagtctttggacaacctggactctcagcggcccagttct
tggcggcagtccccatggcacagccagcccgcaggagtctatgcctcgtcttctgttcaa
gactttagtcgcccacctcctcagctgttgtctacatcaaaccgtgcctacatgaggaac
ccatcctctgccgtactgcctccagccggccctgggaagaccgtcatcccaggccctgcc
ccagggcctcccacctcccacagctactcctcttcagtgtcacagccaggctctcagctc
cgtaacaggtcagtgagtgggaagcgtgtgtgctcctactgtaatagcattctgggcaaa
ggagctgccatgatcatcgagaccctgggtctttgttatcatttacaatgttttaagtgt
gtctcctgtgagtgtgacctcggaggctctttctcaggagctgaagtccgaatccgaaac
aaccagctgtactgcaatgactgctatctccgattcaaatctggacggccaaccgccatg
tga
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integrated database retrieval system
