Pedobacter roseus: H9L23_08200
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Entry
H9L23_08200 CDS
T06980
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
proe
Pedobacter roseus
Pathway
proe03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
proe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
H9L23_08200 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
proe03400
]
H9L23_08200 (ligD)
Enzymes [BR:
proe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
H9L23_08200 (ligD)
DNA repair and recombination proteins [BR:
proe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
H9L23_08200 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
DNA_primase_S
GH3
Motif
Other DBs
NCBI-ProteinID:
QNN44043
UniProt:
A0A7G9QL18
LinkDB
All DBs
Position
1990490..1993186
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AA seq
898 aa
AA seq
DB search
MSLEKYVAKRDFSKTAEPKSGKSRDRSKLHFVIQKHDASRLHYDFRLEMEGVLKSWAVPK
GPSTDPKTKRLAMMVEDHPYDYKDFEGIIPQGEYGGGTVIVWDEGTYEPIEVIKGKKAQE
KHLLKQLNEGSLKIKLNGEKLHGEFALVKTHGMGENGWLLIKHKDDYASTKDITKEDKSV
LSGKTIEKMEKTSDKVWKEGKEQKIKPEKKNPEPKVKKETKPVGDDKSINVKAILKKAPK
SAMPKNIKPMLATLVDEPFDDPNWQYEVKWDGYRALAFINKGKAELFSRNNKSFNEKFYP
IYDLLNEWKINAVLDGEILVLNDRGISNFGSLQNWRSEADGELVFYVFDILWYEGKNLME
LPLDERQAILNDVLPTDDDRVRLGKVFKASGVDFFDAAQRMGLEGIIAKKTDSTYAPDRR
SKEWLKIKVHKRQEVVIAGFTKNADTSKSFSSLLLGVYEKGKLQYVGKVGTGFSDKLQKT
MMEQFKPIIIDKSPFESIPDVNKPSRFRPNPPKAKATWLKPQLVCEVAFTEVTDDGVFRH
PSFQGMREDKKAKEVVREEEKPTQKVVDEVKEKEEHTDAIKPPKGKEPKTLLNPKDETQV
RKIKGHELKFTNLSKVYWPEDKVTKRDMFNYYYQVAEYILPYLKDRPQSLNRFPGGIHGP
SFYQKDVKGKAPEWAETFPYENGEGEKKEYLVGTDEASLLWMASLGCIEMNPWFSRVQHP
DNPDYCVIDLDPDKHTFDQVVEAALETKKVLDAIDVPSYCKTSGSTGMHIYIPLNAKYDY
DQSQMFAKIIVNLVHKQIPEYTSLERMVAARKGKMYLDFLQNRPGATIAGPYSLRPKVGA
TVSMPLHWDEVKPGLKMKDFNIFNALERLKVEGDLFKGVLGKGIDLKKAINKAKSVFG
NT seq
2697 nt
NT seq
+upstream
nt +downstream
nt
atgagtctggaaaaatatgttgccaagcgcgatttctcaaaaacggcagaacccaaatca
ggtaaaagccgcgatcggagcaagttacactttgtgatccaaaagcacgatgcatctcgc
ctgcactacgatttcagactcgaaatggaaggcgttttaaaaagctgggcggtgccaaag
ggtccttcaaccgatcccaaaaccaaacgtttagccatgatggtagaagaccatccttac
gattataaggattttgaaggcattatcccacagggtgaatatggaggcggaaccgtgatt
gtatgggatgaaggtacctacgagccgattgaggttataaaaggcaaaaaagcacaggaa
aaacatctgttaaaacagttaaatgaaggctctttaaaaattaaattgaatggagaaaaa
cttcacggcgaatttgcgctggttaaaacacatggaatgggcgaaaatggctggctactc
atcaaacacaaagatgattatgcctccacaaaagatataaccaaagaagataaatcggtg
ctttccggaaaaaccatcgaaaagatggaaaaaacatcagataaggtgtggaaggaagga
aaagagcaaaaaataaagcctgaaaaaaaaaatcctgagccaaaggttaaaaaagaaaca
aaacctgtaggagatgataaaagcattaatgtaaaagccattcttaaaaaagcaccaaaa
tcggccatgccgaaaaacattaagcccatgttggctacattggtggatgaaccatttgat
gatccaaactggcaatacgaagtaaaatgggatggataccgcgctttggcttttatcaac
aaaggaaaagcagaactgttttcgaggaataataaatcatttaacgaaaaattttatccc
atttacgacctgcttaacgaatggaaaattaatgccgttttggatggagaaattttagtg
ttgaatgataggggcatatccaatttcggttcattacaaaactggagaagtgaggcagat
ggggaacttgttttttatgttttcgatatcctttggtatgagggcaaaaacctgatggag
ttgccgcttgatgagcgccaggccattttaaatgatgtgctaccaactgatgatgatcgt
gtgcgtttagggaaagttttcaaagccagtggagtcgatttttttgatgccgctcaaaga
atgggtttggaaggcatcatcgctaaaaaaacggatagtacttatgctcccgaccggaga
tcgaaagagtggttaaaaattaaagtacacaagcgccaggaggtggtgatagccggtttt
acaaaaaatgccgatacctccaaatctttcagttcgcttttactgggcgtatatgaaaaa
ggaaaattgcagtatgtaggcaaggttggtaccgggttttcggataaactgcaaaaaaca
atgatggagcagtttaagcccattataatagataaaagtcctttcgaaagtatccctgat
gtaaataaaccttcgcggtttaggccaaatccgccaaaggcaaaagccacctggttaaaa
ccgcaattggtttgcgaagtagcatttaccgaagtaaccgatgatggcgttttccgtcat
ccatcttttcagggtatgagagaggataaaaaagcgaaagaagtagtccgtgaagaggaa
aaacctacgcaaaaggttgttgatgaggttaaagaaaaagaggaacataccgatgccata
aaaccacctaaaggaaaagaacccaaaaccttattaaacccaaaagatgaaacgcaggtg
agaaaaataaaaggccacgagttgaaatttaccaatctgagcaaagtttattggccagaa
gataaagtaaccaaaagggacatgtttaattattattatcaggttgctgaatatatttta
ccttatcttaaagaccggccccaatcgcttaaccgttttccgggagggatccacgggccg
agtttttaccagaaagatgttaagggaaaggcaccggaatgggcggaaacttttccttat
gaaaatggcgagggggaaaaaaaggaatacctggtaggtactgatgaagcttctttatta
tggatggcaagtttgggctgtatagaaatgaatccctggtttagccgcgtacagcacccc
gataaccctgattattgcgtaattgatcttgatccggataaacacactttcgatcaggta
gttgaagctgcccttgaaaccaaaaaagtattggatgccattgatgtgccaagttattgt
aaaacctcaggctcaaccggcatgcacatttacattcctttaaatgctaaatacgattat
gaccagagtcagatgtttgctaaaatcattgtgaacctggtgcataaacagattcctgaa
tatacatctttagaacgaatggtggctgccagaaaaggtaaaatgtatcttgatttttta
cagaacaggccaggggcaaccatcgcaggaccttattctttgcggccaaaagtaggggca
acggtttccatgcctttgcattgggatgaagtaaaacccggcttgaaaatgaaagacttt
aatatttttaatgccttagagcgtttaaaagttgaaggagatctttttaaaggagtttta
ggcaaaggtattgacttgaaaaaagctatcaataaagcaaaaagtgtttttggataa
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