KEGG   Pedobacter roseus: H9L23_08200
Entry
H9L23_08200       CDS       T06980                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
proe  Pedobacter roseus
Pathway
proe03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:proe00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    H9L23_08200 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:proe03400]
    H9L23_08200 (ligD)
Enzymes [BR:proe01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     H9L23_08200 (ligD)
DNA repair and recombination proteins [BR:proe03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     H9L23_08200 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase mRNA_cap_enzyme DNA_primase_S GH3
Other DBs
NCBI-ProteinID: QNN44043
UniProt: A0A7G9QL18
LinkDB
Position
1990490..1993186
AA seq 898 aa
MSLEKYVAKRDFSKTAEPKSGKSRDRSKLHFVIQKHDASRLHYDFRLEMEGVLKSWAVPK
GPSTDPKTKRLAMMVEDHPYDYKDFEGIIPQGEYGGGTVIVWDEGTYEPIEVIKGKKAQE
KHLLKQLNEGSLKIKLNGEKLHGEFALVKTHGMGENGWLLIKHKDDYASTKDITKEDKSV
LSGKTIEKMEKTSDKVWKEGKEQKIKPEKKNPEPKVKKETKPVGDDKSINVKAILKKAPK
SAMPKNIKPMLATLVDEPFDDPNWQYEVKWDGYRALAFINKGKAELFSRNNKSFNEKFYP
IYDLLNEWKINAVLDGEILVLNDRGISNFGSLQNWRSEADGELVFYVFDILWYEGKNLME
LPLDERQAILNDVLPTDDDRVRLGKVFKASGVDFFDAAQRMGLEGIIAKKTDSTYAPDRR
SKEWLKIKVHKRQEVVIAGFTKNADTSKSFSSLLLGVYEKGKLQYVGKVGTGFSDKLQKT
MMEQFKPIIIDKSPFESIPDVNKPSRFRPNPPKAKATWLKPQLVCEVAFTEVTDDGVFRH
PSFQGMREDKKAKEVVREEEKPTQKVVDEVKEKEEHTDAIKPPKGKEPKTLLNPKDETQV
RKIKGHELKFTNLSKVYWPEDKVTKRDMFNYYYQVAEYILPYLKDRPQSLNRFPGGIHGP
SFYQKDVKGKAPEWAETFPYENGEGEKKEYLVGTDEASLLWMASLGCIEMNPWFSRVQHP
DNPDYCVIDLDPDKHTFDQVVEAALETKKVLDAIDVPSYCKTSGSTGMHIYIPLNAKYDY
DQSQMFAKIIVNLVHKQIPEYTSLERMVAARKGKMYLDFLQNRPGATIAGPYSLRPKVGA
TVSMPLHWDEVKPGLKMKDFNIFNALERLKVEGDLFKGVLGKGIDLKKAINKAKSVFG
NT seq 2697 nt   +upstreamnt  +downstreamnt
atgagtctggaaaaatatgttgccaagcgcgatttctcaaaaacggcagaacccaaatca
ggtaaaagccgcgatcggagcaagttacactttgtgatccaaaagcacgatgcatctcgc
ctgcactacgatttcagactcgaaatggaaggcgttttaaaaagctgggcggtgccaaag
ggtccttcaaccgatcccaaaaccaaacgtttagccatgatggtagaagaccatccttac
gattataaggattttgaaggcattatcccacagggtgaatatggaggcggaaccgtgatt
gtatgggatgaaggtacctacgagccgattgaggttataaaaggcaaaaaagcacaggaa
aaacatctgttaaaacagttaaatgaaggctctttaaaaattaaattgaatggagaaaaa
cttcacggcgaatttgcgctggttaaaacacatggaatgggcgaaaatggctggctactc
atcaaacacaaagatgattatgcctccacaaaagatataaccaaagaagataaatcggtg
ctttccggaaaaaccatcgaaaagatggaaaaaacatcagataaggtgtggaaggaagga
aaagagcaaaaaataaagcctgaaaaaaaaaatcctgagccaaaggttaaaaaagaaaca
aaacctgtaggagatgataaaagcattaatgtaaaagccattcttaaaaaagcaccaaaa
tcggccatgccgaaaaacattaagcccatgttggctacattggtggatgaaccatttgat
gatccaaactggcaatacgaagtaaaatgggatggataccgcgctttggcttttatcaac
aaaggaaaagcagaactgttttcgaggaataataaatcatttaacgaaaaattttatccc
atttacgacctgcttaacgaatggaaaattaatgccgttttggatggagaaattttagtg
ttgaatgataggggcatatccaatttcggttcattacaaaactggagaagtgaggcagat
ggggaacttgttttttatgttttcgatatcctttggtatgagggcaaaaacctgatggag
ttgccgcttgatgagcgccaggccattttaaatgatgtgctaccaactgatgatgatcgt
gtgcgtttagggaaagttttcaaagccagtggagtcgatttttttgatgccgctcaaaga
atgggtttggaaggcatcatcgctaaaaaaacggatagtacttatgctcccgaccggaga
tcgaaagagtggttaaaaattaaagtacacaagcgccaggaggtggtgatagccggtttt
acaaaaaatgccgatacctccaaatctttcagttcgcttttactgggcgtatatgaaaaa
ggaaaattgcagtatgtaggcaaggttggtaccgggttttcggataaactgcaaaaaaca
atgatggagcagtttaagcccattataatagataaaagtcctttcgaaagtatccctgat
gtaaataaaccttcgcggtttaggccaaatccgccaaaggcaaaagccacctggttaaaa
ccgcaattggtttgcgaagtagcatttaccgaagtaaccgatgatggcgttttccgtcat
ccatcttttcagggtatgagagaggataaaaaagcgaaagaagtagtccgtgaagaggaa
aaacctacgcaaaaggttgttgatgaggttaaagaaaaagaggaacataccgatgccata
aaaccacctaaaggaaaagaacccaaaaccttattaaacccaaaagatgaaacgcaggtg
agaaaaataaaaggccacgagttgaaatttaccaatctgagcaaagtttattggccagaa
gataaagtaaccaaaagggacatgtttaattattattatcaggttgctgaatatatttta
ccttatcttaaagaccggccccaatcgcttaaccgttttccgggagggatccacgggccg
agtttttaccagaaagatgttaagggaaaggcaccggaatgggcggaaacttttccttat
gaaaatggcgagggggaaaaaaaggaatacctggtaggtactgatgaagcttctttatta
tggatggcaagtttgggctgtatagaaatgaatccctggtttagccgcgtacagcacccc
gataaccctgattattgcgtaattgatcttgatccggataaacacactttcgatcaggta
gttgaagctgcccttgaaaccaaaaaagtattggatgccattgatgtgccaagttattgt
aaaacctcaggctcaaccggcatgcacatttacattcctttaaatgctaaatacgattat
gaccagagtcagatgtttgctaaaatcattgtgaacctggtgcataaacagattcctgaa
tatacatctttagaacgaatggtggctgccagaaaaggtaaaatgtatcttgatttttta
cagaacaggccaggggcaaccatcgcaggaccttattctttgcggccaaaagtaggggca
acggtttccatgcctttgcattgggatgaagtaaaacccggcttgaaaatgaaagacttt
aatatttttaatgccttagagcgtttaaaagttgaaggagatctttttaaaggagtttta
ggcaaaggtattgacttgaaaaaagctatcaataaagcaaaaagtgtttttggataa

DBGET integrated database retrieval system