Proteiniborus sp. MB09-C3: QO263_04820
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Entry
QO263_04820 CDS
T09105
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
prom
Proteiniborus sp. MB09-C3
Pathway
prom03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
prom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
QO263_04820 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
prom03400
]
QO263_04820 (mfd)
Enzymes [BR:
prom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
QO263_04820 (mfd)
DNA repair and recombination proteins [BR:
prom03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
QO263_04820 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
DUF924
RecG_dom3_C
YjdM
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
WIV13039
LinkDB
All DBs
Position
1017705..1021241
Genome browser
AA seq
1178 aa
AA seq
DB search
MELNMFIDSLKNLSSYDQLLNEINKKSSPIALHGLSEENIAHISYGLNKHLNRQILIITY
DDMRAKKIVEDLSFFSRENSELFPTKEVVLYDIDAHSHEVSNHRVKVMDRLIQGENIAVV
SSIHAIMNKIMAKDLIRKYTIDIKLGQTIDLNQLSKTFVVQGYERVDMVEGVGQFSIRGG
IIDLFSVNSQNPFRIELFDDEIDSIRIFDLKSQRSIENLSNIHIPPIKEILILDGEMESI
INGIEGDLNTSIKKLQKKGETEIIDNLTEKFRYYIDRLSNGLSIGNIDLLVPYLKQNISN
IIEYFKNDSLVIIDEPQRIEESIKGLKQDFINRYTDQFERGEVLSKHQDIYHTYDTILDN
ISKMTCITTTNLLKNNPRFKPKAIINFTIKSMQSFHNKIEILSDELKHFKYRGYKTIILS
GTKERGIRLAQNLLENNIECSYVDDASREIKSGQVFITAGSISRGFEYSNLKLAIISDKE
VFGTYKKARSVKTRKDTAKIASFTDLNIGDYVVHETHGIGKYVGVEQLTVQGVRKDYLSV
KYSGEDKLYVPIDQMNLIQKYIGSDTTEPKVNKLGSSEWAKTKTKVKKAIEDMAADLIKL
YASRQTIKGYRFSHDTPWQKQFEDAFSYEETDDQLRCIEEIKRDMEKDRPMDRLLCGDVG
YGKTEVALRAAFKAIMDGKQVAILVPTTILAQQHYNTIIERFSQFPVKAEMLSRFRTPNQ
QKKIINDLKSGNLDIVVGTHRLLSKDVKYKDLGLLVIDEEQRFGVKHKESIKVIKESIDV
LTLTATPIPRTLHMSLIGIRDMSVIEEPPEERYPVQTYVVEYNDQLMRDAIIRELNREGQ
IYYLYNRVQNIQQFASKVKSLVPDARVAIGHGQMSERELERVMMDFLNRETDVLVCTTII
ETGLDIPNVNTIIINDADKMGLSQLYQLRGRVGRSNRVASAYFTYEKDKVLTEVAEKRLK
AIKEFTEFGSGFKIAMRDLEIRGAGNLLGSEQHGQMAAIGYDLYVKFLDETIKKLKGKQG
EEAVETTIELNVDGYIPKKYIENEEQKVEIYKRIASIMNKQDYSDVLEEIIDRFGEIPNE
VTNLLKISYIKSLCSKAKIVSVSQNDQIIKLEFKSLESITPDLINELVLSYGRRMTFDLS
KNPNFKYKLTGKSQESILKELEKVIEKISSFHMDTNNI
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atggaattaaatatgtttatagacagtttaaagaatctgtcttcatatgaccaattattg
aatgaaataaataaaaaatcctcaccaattgccttacatggattatcagaggagaatata
gcccatatatcgtatgggctaaataagcacttaaatagacagatacttataataacctat
gatgatatgagagcaaaaaaaatagtagaggacttaagcttttttagtagagaaaatagc
gaattatttcccacaaaggaagtagttctttatgatattgatgctcatagtcatgaagta
tcaaaccatagagtaaaagttatggatagacttatccagggcgaaaacatagctgtggta
tcatctattcatgccataatgaacaagataatggcaaaagatttgattaggaaatataca
attgatattaaattggggcagactattgatttgaaccagctatcaaaaacctttgtagtc
caaggctatgaaagggtggacatggtagaaggagtaggacagtttagtataagaggaggc
attattgaccttttttcagtcaattctcaaaatccttttaggattgaactatttgatgat
gaaatagattcaataagaatatttgatttaaaaagtcaaagatcaattgaaaatttatct
aatattcacattccgccaattaaagagattctaattttagatggagagatggagagtatc
atcaatggcattgaaggtgatttaaacacatctatcaaaaagcttcaaaaaaagggagaa
acagaaataattgataatctgactgaaaagtttagatattatatagatagattatcaaat
ggactaagtataggaaatattgacttactagtaccttacttgaaacaaaatatttctaat
attattgaatacttcaaaaatgactcgctggtcataatagacgaaccgcagagaatagaa
gaaagcattaagggtcttaaacaggatttcataaatagatacactgatcaatttgagaga
ggagaagtattatcgaagcatcaggatatataccatacctatgatactattttagacaat
atatctaaaatgacttgcatcactacaacaaatcttttaaaaaataatcctagatttaaa
cctaaggctataatcaatttcactataaagagtatgcagtcctttcataataagattgag
attttatcggatgagcttaagcattttaaatatagaggatataagaccataatactttct
ggcactaaagaaagagggattaggctagcacaaaaccttttagaaaacaatatcgaatgt
agctatgtagatgatgcctctagggaaatcaaatcaggacaggtatttataactgctggg
agcataagcagaggatttgaatattcaaacctaaagcttgcaattataagcgataaagaa
gtgtttgggacatataaaaaggcaagatcagtaaagacaagaaaggatactgctaagatt
gcatcctttacagatttaaatataggggattatgtagtgcatgaaacccatggtatagga
aaatatgttggagtagagcaattaacagtgcagggagtacgaaaggactatttatcagta
aagtattcaggtgaagataagctttatgtgccaatagatcaaatgaatctaattcaaaaa
tatattggttcagatacaactgagcctaaggtaaataagcttggcagcagtgaatgggca
aaaactaagacaaaggttaaaaaagccatagaagatatggcagcagatttgattaagctt
tatgcttccagacaaactattaagggatataggttttctcatgatactccatggcaaaaa
caatttgaagatgctttttcatatgaggaaaccgatgatcaattaagatgtatagaggaa
atcaaaagagatatggaaaaagatagacctatggatagattgttatgtggagatgtgggc
tatggaaagactgaggtggctttgagggctgcatttaaggcaataatggatggcaaacag
gtggctattttagtacccacaaccatattagctcagcagcattataatacaataatcgag
agatttagccagtttcctgtaaaagctgagatgttaagcagatttagaacaccaaatcag
caaaagaaaataataaatgacttaaaaagcggaaatcttgatattgtagttggaactcac
agacttctatcaaaagatgtaaaatataaggatttaggattattggtcatagatgaagag
caaagatttggggttaagcataaggaatcaattaaagtaataaaggagagtatagatgtc
cttaccctaacagctactcctataccgagaactcttcatatgtctttaataggtattaga
gatatgagtgtcattgaagaacccccagaggagagataccctgtacagacatatgttgtt
gaatacaacgaccagctaatgagagatgctattattagagaactcaatagggaaggacag
atttattatctttataatagagttcaaaatattcaacagtttgcttctaaggtaaaaagc
ttagttcctgatgccagggtagccattggtcatgggcagatgagtgagagagagcttgaa
agagtaatgatggattttcttaatagagagacagatgtgttggtatgtacgaccattatt
gagacaggtcttgacatacctaatgtaaacacaataatcataaatgatgctgacaaaatg
ggactttctcaattatatcagttaagaggcagggtagggcgttctaacagagtagcctcc
gcctactttacttatgagaaggataaagtgttaactgaggttgcagagaagaggttaaaa
gcaataaaggagtttactgagtttggctctggatttaaaatagcaatgagagacttggaa
atcagaggagcaggcaacttgctgggctcagaacagcatggtcaaatggctgccataggc
tatgatctatatgttaaattcctagatgagactataaagaaacttaaaggaaaacaaggg
gaagaagcagtagagactactatagaacttaatgtagacggatatatacctaaaaaatac
atcgaaaacgaggaacagaaagtagaaatatataagagaattgcatctattatgaataag
caggattattcagatgtcttagaggaaataatagacagatttggcgaaataccaaatgaa
gtgacaaatctattaaagatatcatatatcaaatctctttgcagtaaggcaaagatagtt
tctgtatctcaaaatgatcaaattataaagctagaatttaaatcgctagaaagcattact
cctgatttgataaatgaattagtcttgtcctatggcagaagaatgacatttgatttatct
aaaaacccaaatttcaaatataagcttacaggcaagtcacaagagagcatattgaaagag
ttagagaaggtaattgaaaaaattagtagttttcatatggatacaaataatatataa
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