Proteus sp. CD3: BTA34_05530
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Entry
BTA34_05530 CDS
T06244
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
prot
Proteus sp. CD3
Pathway
prot03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
prot00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BTA34_05530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
prot03400
]
BTA34_05530
Enzymes [BR:
prot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BTA34_05530
DNA repair and recombination proteins [BR:
prot03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BTA34_05530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MFD_D3
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QEZ91838
LinkDB
All DBs
Position
complement(1241981..1245430)
Genome browser
AA seq
1149 aa
AA seq
DB search
MSSEYRYQLPIKQGDTRQLGQLTGAACALECAEIIKRHSGLVVLVTRDMQNALRLQDEIR
QFCDYPVETLSDWETLPYDSFSPHQEIISNRLSTLYRIPSLLKGILILPVNTLMQKVCPT
DYLASHALVMQKGEVLSRDNLRKTLDEAGYRHVEQVLEHGEYATRGALLDLFPMGSEFPY
RIDFFDDEIDSLRTFDVDTQRTLAEVDQINLLPAHEFPTDANAIETFRSQWRERFDVRRD
PEHIYQQVSKHILPTGIEYWQSLFFEQPLSNLFAYFPKNTLIVTQDLQDFAEKFWQDINQ
RFESRRVDPMRPLLPPDDIWLNVDKFNKELKQWPRIQLKTETLPEKAGQTNLGYQPLPDL
SINAQSKSPLDNLRRFQEQFSGSVIFSVESEGRRETVQELLSRIKIAPKQIIELSDAQEK
GFYFIIGAAEHGFIDNHRQLAMICESDMLGERVNRRRQDNRRAINTDTLIRNLAELSIGQ
PVVHLQHGVGRYQGMTTLEAGGVKAEYLMLSYAGNDKLYVPVSSLHLISRYSGGADENAP
LHKLGGDAWVRARQKAAEKVRDVAAELLDVYAQREVKTGFAFKMDKEQYQSFRQSFPFET
TPDQEMAINAVLSDMCQAISMDRLVCGDVGFGKTEVAMRAAFLAVNNNKQVAILVPTTLL
AQQHFDNFRDRFANWPVNIEMISRFRSAKEQQQITEKLAEGTVDIVIGTHKLLQPNIQWK
DLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA
RRLSVKTFVREYDDLVVREAILRETLRGGQVYYLYNDVENIEKARERLAALVPEARIGIG
HGQMRERELERVMNDFHHQRFNVLLCTTIIETGIDIPSANTIIIERADHFGLAQLHQLRG
RVGRSHHQAYAYLLTPHPKAMTKDAHKRLEAIASLEDLGAGFALATHDLEIRGAGELLGE
EQSGQMNTVGFSLYMELLESAVEALKEGREPSLEDLTNQQTEIELRMPVLLPDDYIPDVN
VRLSFYKRIASAIDVTELNDLRAELIDRFGKLPDAGRYLLRNAAIRLSAMSLGITRIEAH
DKGGFIEFGEKNKVDPGYLISLLQEQPAIFRLDGPSKLKFITDLTEREKRLTFIDDMLSA
FNEHKITAL
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcagaatatcgttatcaacttcctataaaacaaggggatactcgtcagctaggt
caactgactggtgccgcttgcgctctagaatgtgcagagatcatcaaacgtcactctgga
ttagtcgttcttgttactcgtgatatgcaaaatgcattgcgtttacaagatgaaatccgt
cagttttgtgattatccagtagagacattatcggattgggaaacactgccatacgacagt
ttttcacctcaccaagagatcatctcaaaccgcctttctacgctataccgtattccatca
cttctcaagggaattttaatcttacctgtcaatacgttaatgcagaaagtctgccctacg
gattatctcgcaagtcatgcgttggtaatgcaaaaaggagaggtactttctcgtgataat
ttacgtaaaacattagatgaagcgggatatcgtcatgttgagcaagtattagaacatgga
gaatacgcaacgcgtggggcattattagatttatttccgatgggaagtgaatttccttat
cgtattgatttttttgatgacgaaatagatagcctgcgtacttttgatgtcgatacacaa
cgaacattagctgaagttgatcaaattaatttattgcctgcgcatgaattccccacagat
gcaaatgcgatagaaactttccgtagccaatggcgtgaacggtttgacgtaagacgtgat
ccagaacatatttatcagcaagtcagtaaacacatcttgccaacgggaattgaatattgg
caatccctgttttttgaacagcctttatctaacttatttgcttatttccctaaaaacaca
ttgatagtgacgcaagatctacaagattttgcagaaaaattttggcaagacattaatcaa
cgttttgaaagccgtcgcgttgatcctatgcgccccctgttaccacctgatgatatttgg
ctgaacgttgataaatttaataaagagttaaaacagtggcctcgtattcaacttaaaaca
gaaacgttgccagaaaaggcaggacagaccaatttaggctatcaacctcttcctgattta
tcgattaacgcgcaaagcaaatcacctttagataacttacgtcgattccaagaacaattt
tcaggcagcgttattttctctgttgaaagtgaaggacgacgcgaaaccgtacaagagctt
ttatcgcgcataaaaatagcgcccaagcagatcattgaattatctgatgctcaagagaaa
ggtttttactttatcattggtgctgctgaacatggatttattgataaccatcgtcaatta
gccatgatctgtgaaagtgacatgttaggtgaacgagttaatcgtcgtcgccaagacaat
cgccgtgcaattaatacagatacattaattcgtaaccttgctgaattaagcataggacaa
cccgttgttcatcttcaacatggtgttggtcgctatcaaggaatgacaacactagaagcg
ggtggcgttaaagctgaatacttgatgttaagttacgcgggtaatgacaagctttatgtg
cctgtttcatcactgcatttgattagtcgttattctggtggtgcagatgaaaatgcccca
ctacataaattgggtggcgatgcatgggtaagagcgcgccaaaaagccgctgaaaaagtg
cgtgatgtcgcagcagagttattagatgtttatgctcaacgcgaagtaaaaacaggcttt
gcctttaaaatggataaagagcagtaccaatcattccgccaaagctttccttttgaaaca
acacctgatcaagaaatggcaatcaatgctgtacttagcgatatgtgccaagccatttca
atggatagactcgtctgtggtgatgtcggatttggtaaaacagaagtggcgatgcgcgct
gcatttcttgccgttaacaacaataaacaagtcgctattttagtgccaactaccctattg
gctcagcaacattttgataatttccgtgatcgttttgctaattggcccgttaacattgag
atgatctcgcgttttcgtagcgcaaaagagcaacagcaaattacagaaaaactggctgaa
ggaaccgttgatattgtcattggtacacataaattgcttcaacctaatattcagtggaaa
gatttagggctattaattgtcgatgaagagcaccgttttggtgttcgccataaagagcgt
ataaaagccatgcgtgctaatgtcgatattttaacgctaacagcaacgccaattcctcgt
acattgaatatggcaatgagtggtatgcgtgatctttccattattgcaacaccaccagca
cgtcgcttatcggtgaaaacctttgtgcgagaatatgacgacttagtagtacgtgaagct
atcttgcgtgagacattgcgtggtggacaagtttattacttgtataacgatgttgaaaat
atcgaaaaagcccgcgagagactagctgcactcgttcctgaagcgcgtattggcattggt
cacgggcaaatgcgtgaacgtgaacttgagcgtgtgatgaatgatttccatcaccaacgt
tttaatgtgttactttgcaccacaattattgaaacaggtatcgatatacctagcgcgaac
accattattattgaacgagcagatcactttggcttagcgcaattacatcagttacgtggt
cgtgtaggtcgttctcatcatcaagcttatgcttatttgctgacgccacatcctaaagca
atgacaaaggatgctcataaacgtttagaagcgattgcttcactggaagatctgggtgca
ggttttgcattagcaactcatgatctagaaattcgaggtgcaggtgaattattaggagaa
gaacagagcggtcaaatgaatactgttggtttctcactttatatggaattgctagaaagt
gcagtagaagcgcttaaagaaggtagagagccatcacttgaagatctcaccaatcaacaa
actgaaattgaattaagaatgccagtcttgttgccggatgattatattcctgatgtaaat
gtcagactttcattctataaacgaattgccagtgccattgatgtaacagagcttaatgat
ctaagagcagagttaattgatagatttggtaagctgcctgatgcagggcgttatctactg
cgtaatgcggctattcgtttaagtgcaatgagcttgggtatcactcgaattgaagcccat
gataaaggtggatttattgagtttggtgaaaagaataaggttgatccaggatatttaatc
agtctacttcaagagcaacctgctattttccgcttagatggcccttcaaaactgaaattt
attactgatttaactgagcgtgaaaaacgactcacttttattgatgatatgttaagtgca
tttaatgagcataaaataaccgcactctag
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