Prosthecochloris sp. SCSIO W1101: OO006_10480
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Entry
OO006_10480 CDS
T09696
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
prow
Prosthecochloris sp. SCSIO W1101
Pathway
prow03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prow00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OO006_10480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prow03019
]
OO006_10480
03009 Ribosome biogenesis [BR:
prow03009
]
OO006_10480
Enzymes [BR:
prow01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OO006_10480
Messenger RNA biogenesis [BR:
prow03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OO006_10480
Ribosome biogenesis [BR:
prow03009
]
Prokaryotic type
rRNA helicases
OO006_10480
BRITE hierarchy
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
CMS1
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
UZJ40775
LinkDB
All DBs
Position
complement(2275553..2277313)
Genome browser
AA seq
586 aa
AA seq
DB search
MTTKKHVPPTGFKDLGLSDQVLEALDDVGYETPTPIQLQTIPIILEGGDILGQAQTGTGK
TAAFALPLLSMVDLSKAEPQVLVLTPTRELAIQVAEAFQRYAACMDDFHVLPIYGGQDYS
GQLRRLKRGVHVVVGTPGRVMDHIRRKTLVLDGLKTLVLDEADEMLRMGFVDDVEWILDK
TPASRQVALFSATMPAEIRRISKKYLRDVSEIAIKAKSSTVETITQRFLPVSGQHKLDAL
TRILEIEHFDGIILFVRTKTATLELSEKLRARGYAAAALNGDMVQKHREKTIGQFKGGEY
NMLVATDVAARGLDVERISHVINYDIPTDTESYVHRIGRTGRAGRSGEAILFVTPREMSM
LRTIEKAIRKRIDRMELPSTESINDKRVARFKQQISDTLSTADLGFFRDLVESYCYEHEV
TAIDAASALANLYQGDSPLLISARPQKSSRRKKDGGTPGDAGNKLFKREKDPLYDVIDYE
RYRLEVGEKHGVKPGNIAGAIINEIGVESGAVGRISIFEDYSTVELPEGMPKDVLRELGK
AWVCGQQLHASRLSKDFGGRRKLSVKDKRKPKKKSKRVSRVKGKRG
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atgacgacgaaaaaacatgtcccaccaaccggattcaaagaccttgggctttcggatcag
gttctcgaggctctcgatgatgtgggttacgaaacacctacccccattcagcttcagacc
attccaattattctcgaagggggagatattctcggccaggctcagaccggtaccggtaaa
acggctgcatttgcattgccattgctttcaatggtcgatctttccaaagctgaacctcaa
gtgctggtgctcaccccgacacgagagcttgcgattcaggtggcggaagcctttcagcga
tacgctgcctgcatggatgatttccatgtactcccgatttacggaggacaggattacagt
ggtcagcttcggcgattgaagcggggagtgcatgtcgtggtcggtacaccgggaagggtt
atggaccacatcagaaggaaaacccttgtgcttgacgggctgaagactcttgtgctcgac
gaagctgacgagatgcttcgcatgggctttgtagacgatgtcgaatggattctcgataaa
acaccagcctcacggcaggtggcgcttttttcggcaaccatgcctgcggaaattcgccgt
atttcgaagaaatatcttcgtgacgtttcagaaatcgcgatcaaggcgaaaagctccacg
gtcgaaacgataacacaacgatttcttcctgtttcaggtcagcacaagctcgacgcactt
acccgtattctcgagatcgagcatttcgacggtataatactttttgtccgtacaaaaacc
gccacactggagttgtccgagaagctgagggccagagggtatgctgctgcggctcttaac
ggtgatatggttcagaagcaccgcgaaaaaaccattggacagttcaagggcggggagtat
aacatgcttgttgcaacggatgtcgcagcaagaggactcgatgtcgagagaataagtcat
gtgatcaattacgatataccgaccgatacggaaagctatgttcaccggataggtagaacc
ggtcgtgcagggcgaagcggtgaggcgatacttttcgttacccctcgtgaaatgtcgatg
ctgcgaacgattgaaaaagccatcaggaagcgtatcgacaggatggaattgccatcgacc
gagagtatcaatgacaaacgcgtagcacgtttcaaacagcagatcagcgatacgctttcg
acggccgatctcggttttttccgtgatcttgtagagtcatattgttacgagcacgaagtg
acagccatcgatgcggcctcggctcttgcaaatctctatcagggtgacagccccttgctc
atatcggcaaggccgcaaaagtcttcgcggcggaaaaaagatggagggactcccggagat
gccggtaacaaactttttaaacgggaaaaagatcctctttacgatgttatcgattacgag
cggtaccgtttggaggtgggtgagaaacacggggtgaaaccggggaacatcgccggtgcg
atcatcaatgaaattggggttgaaagtggtgcggtaggccggatcagcatctttgaggat
tacagcactgtcgaactgcctgaaggcatgccgaaggatgtcttgagagaactcggcaag
gcgtgggtgtgcggtcagcagctccatgcgtcgaggctttcaaaagattttggcggacgg
agaaagctttcggtaaaagataagcgaaaaccgaaaaagaagtccaagcgtgtatcccga
gtcaaaggcaaaagaggttga
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