Pseudoalteromonas rubra: AT705_04405
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Entry
AT705_04405 CDS
T04179
Name
(GenBank) DNA topoisomerase I subunit omega
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
prr
Pseudoalteromonas rubra
Brite
KEGG Orthology (KO) [BR:
prr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
prr03032
]
AT705_04405
03400 DNA repair and recombination proteins [BR:
prr03400
]
AT705_04405
Enzymes [BR:
prr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
AT705_04405
DNA replication proteins [BR:
prr03032
]
Prokaryotic type
DNA Topoisomerases
AT705_04405
DNA repair and recombination proteins [BR:
prr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
AT705_04405
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Topo_Zn_Ribbon
TOP1_ZnF
Toprim
zf-C4_Topoisom
YdjO
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
ALU42247
UniProt:
A0A0L0ETG4
LinkDB
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Position
1:complement(978342..980984)
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AA seq
880 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGKDYIVKSSVGHIRDLPTSGAGKTKGLATKSPAEVRKMS
PEEKAEYRKKKDYANLVARMGIDPEKGWEPHYEVLPGKEKVVQELAKLAENADTIYLATD
LDREGEAIAWHLEEVIGADASKYKRVVFNEITKNAITQAFEAPGQLNTDMVYAQQARRFL
DRVVGFMVSPLLWQKVARGLSAGRVQSVAVRLLVEREREIKAFIPEEFWDIHADTALAEQ
DVRFAVTKYQGEAFKPLNETQANKAVTELQKAQYQVVKVEEKPSKSRPSAPFITSTMQQA
ASTRLGYGVKKTMMLAQRLYEAGYITYMRTDSTNLSNDAVEMARGYIQDNFGDKYLPGAP
IKYSAKDNAQEAHEAIRPSDVNILSGHVEGVDADAKKLYELIWRQFVACQMTPAEYDLTN
ITVGAGDYTLKARGRVLRFDGWTRVQPAVRKKNEEEQALPAVAVGDIVQLQALDPKQHFT
KPPARFSEASLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYAEKMGEIVTDRLI
ENFDELMDFDFTAKMENRLDEIAEGDRIWTQVLDKFYADFSNQLDLAGKEEAEGGMRQNV
MVETDIDCPTCGRKMGIRTASTGVFLGCTGYNLPPKERCTTTMNLIPGDEAVDADVEDAE
TESLRQMKRCPICETAMDSYLIDEKRKLHVCGNNPGCSGYVIEEGSFKIKGYDGPVIECD
KCGSDMQLKSGRFGKYFDCTSDDCKNTRKLLKSGEPAPPKEDPVHLPELPCEKSEAYFVL
RDGASGIFLAAHTFPKSRETRAPKVAELKRFRDRISPKFYYLADAPEQDNDGNLAVVRYS
RKTKTQYVMTEVEGKATGWKATYVSGKWVEEEKKRKSAKS
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctagtaatcgtagagtctcccgcaaaggcaaaaactattaataagtac
ctgggtaaagactacattgtaaaatccagtgtcggtcatatccgtgatcttcctacctca
ggcgcaggcaaaaccaaaggccttgcaactaaatctcctgctgaagtgagaaaaatgtcg
ccagaggaaaaagctgagtacagaaaaaagaaagattatgcgaacctggttgcccgcatg
gggatagacccggaaaagggctgggagccgcactatgaagtgttacccggcaaagaaaaa
gtggttcaggagctggctaagctcgcagaaaatgccgacaccatctatctcgcaaccgat
ttggatagagagggagaggccatcgcatggcacctggaagaagtgattggtgctgatgca
agcaaatacaaacgggttgtatttaacgagatcaccaaaaatgccatcacgcaagctttt
gaggcgccaggtcagttaaacacagacatggtgtatgcgcagcaggcacgacgctttctg
gatcgcgtggtgggctttatggtgtcaccgttgttgtggcaaaaagtcgcgcgcggattg
tcagcgggccgtgttcagtctgtggcggtacgcttgctggttgaacgtgagcgtgaaatc
aaagcctttattccagaagagttctgggatattcacgcagatactgcactggcagagcag
gacgttcgttttgctgtcactaagtatcagggcgaagcgtttaaaccgttgaacgaaacg
caggccaataaagcggttactgaactgcaaaaagcgcagtatcaggttgttaaggttgaa
gagaaacccagtaagagccgcccgagtgctccttttataacgtcaaccatgcaacaggcc
gccagcacccgattgggttacggcgttaaaaagaccatgatgctggcacagcgtttgtac
gaagcgggttatattacctatatgcgtactgactcaaccaacttatcgaatgatgcggtt
gaaatggctcgtggttatattcaggacaactttggcgataagtacttgccgggtgcgcct
attaaatacagtgcgaaagacaatgcacaggaagcgcacgaagcaattcgcccttcagat
gtgaacatcctttccggccatgttgagggcgtagatgcagacgctaagaagctctatgag
ctgatatggcgtcagtttgtggcgtgccaaatgacccccgcagagtacgacctgaccaat
atcactgtaggtgcgggcgattacacgcttaaagcgcgcggccgagtgttacgttttgac
ggttggacacgtgttcagccagcagtccgtaagaaaaacgaagaagagcaggcactacca
gctgtggcggtgggcgacatcgttcagttgcaggcacttgatcctaagcagcacttcaca
aaaccacctgcgcgtttcagcgaagcaagcctggttaaagagctcgaaaagcgtggcatt
ggtcgtccttcaacgtatgcgtcgattatttcgaccattcaggaccgtggctatgtgcgg
gtagaaaaccgccgtttttatgccgagaaaatgggcgaaatagtgacagaccgtttgatc
gaaaacttcgatgagctgatggactttgactttacggccaaaatggaaaaccgcctggat
gaaatcgcagaaggcgatcgaatctggacccaggtgcttgataagttttacgctgatttc
tccaaccaacttgacttggctggtaaagaagaagcggaaggtggcatgcgccagaatgtg
atggttgagactgacattgactgtccaacctgtggtcgtaagatggggatccgtacagcc
tctaccggggtattcctgggctgtacaggctacaacttgccaccaaaagagcgctgtacc
accaccatgaacctgatccccggggatgaagcggttgatgccgatgttgaagacgcagaa
actgaaagcctgagacagatgaagcgttgccctatctgtgaaaccgcaatggattcctat
ctgatagatgaaaagcgcaagctgcatgtgtgtggtaacaacccgggctgtagcggttat
gtcattgaagagggcagctttaaaatcaagggctatgatggcccggtgattgagtgtgat
aagtgtggttcagacatgcagcttaagtctggccgttttggcaagtactttgactgcacc
agtgatgactgtaagaacacgcgtaagctacttaaaagcggtgaacctgcgccaccaaaa
gaagatccggtacacttaccagaactaccctgtgagaagtctgaagcctattttgtgctg
cgtgacggtgcatctggtatcttcctggcggcacataccttccctaaatccagggaaacc
cgtgcaccaaaagtggccgagctaaagcgtttcagagatcgtatttcgcctaagttctat
tatctggcggatgcgccggagcaggataatgatggtaatctggccgttgtaaggtattcg
cgtaagaccaagacgcagtatgtgatgactgaggtggaaggtaaagccactggctggaaa
gcgacttatgtaagtggcaagtgggtcgaagaagagaaaaagcgtaagagcgctaaatct
taa
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