Xylanibacter ruminicola: PRU_0900
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Entry
PRU_0900 CDS
T01212
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pru
Xylanibacter ruminicola
Pathway
pru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PRU_0900 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pru03021
]
PRU_0900 (rho)
03019 Messenger RNA biogenesis [BR:
pru03019
]
PRU_0900 (rho)
Transcription machinery [BR:
pru03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
PRU_0900 (rho)
Messenger RNA biogenesis [BR:
pru03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PRU_0900 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
NACHT
AAA
OB_RNB
Motif
Other DBs
NCBI-ProteinID:
ADE81628
UniProt:
D5ERJ2
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All DBs
Position
1052198..1054171
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AA seq
657 aa
AA seq
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MYTKEELESMDIPQLVGIADELGIKVSPDDQLTDVVYAILDKAAEQSATAEDSPKRKRTR
IAKKDTSKVYTVNGEDGENLDSKSNRTRKKAEQPQLFADMPAAPAAPAEAEPEEAPKPKK
RGRKSKAEKEAEEAAARAAIEAAAAKAAAEAEEFVVPEAAQFAVGADDADDEVAPNAIEQ
LREKMAATKVAAPESEYEPEEEPEQAPEAQEVAPDPMTDEVDENGVWMGDPGDGTDFITI
LDIPIEDQSAIPTLDMFDRPVAPVATEQPVLNRNVVPSSQPRYDFADLIDANGVLEILTD
GYGFLRSSDYNYLSSPDDVYVAPQQIKRYGLKTGDVVECTVRPPHEGEKFFAMTDVRSIN
GRHPDEVRNRVAFEHLTPLFPEEKFTLCGDRATTNPSVRIVDLFSPIGKGQRALIVAQPK
TGKTVLMKDIANAIAANHPEAYIMMLLIDERPEEVTDMARTVNAEVIASTFDEPAERHVK
IAGIVLEKAKRMVECGHDVVIFLDSITRLARAYNTVAPTSGKILTGGVDSNALQKPKRFF
GAARNIEGGGSLTIIATALVDTGSKMDEVIFEEFKGTGNSEIQLNRSLANKRIFPAIDIV
LSSTRRDDLLLDDTTLNRMWIMRKFIADMNPIEAMSTVRDRLVTTRTNEEFLLSMNG
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgtatacaaaagaagaattagaatctatggacataccccagcttgtgggtattgccgac
gagcttggtattaaggtttcgcccgacgaccagcttactgacgtggtgtatgccatactc
gacaaggctgctgaacagagcgccacagccgaggattcacctaaacgcaagcgtacacgt
attgcaaagaaagataccagcaaggtttatacagtaaatggcgaggacggtgagaatctc
gactcgaagagcaaccgtacccgcaaaaaggccgagcagccacagctgtttgccgatatg
cctgctgcccccgctgcccctgccgaggctgaacccgaagaagcacctaaacctaagaag
cgcggacgtaagagcaaggccgagaaagaggccgaagaggctgctgcacgtgctgccatc
gaggccgctgctgccaaagccgctgccgaggctgaggagtttgttgtgcccgaggctgcc
cagtttgctgttggtgccgatgatgccgacgatgaggtagcacctaatgctatcgagcag
ctacgtgagaaaatggcagctacaaaggttgctgcccccgagtcagagtatgagcccgag
gaagagcctgagcaggcacctgaagcccaggaggttgcacccgacccaatgaccgacgag
gttgatgagaatggtgtatggatgggcgacccaggcgatggtaccgattttattaccatt
ctggatatccccatcgaggaccagagcgctatacctacactcgatatgttcgaccgtccg
gtagcacctgttgccaccgagcagcccgttctcaatcgtaatgtcgttcccagttcgcag
ccacgctacgactttgccgacctgattgatgctaacggcgtattggagatacttaccgac
ggttacggtttcctgcgttcgagtgattacaactacctgtcgtcacccgacgatgtatat
gtagctccccagcagattaagcgttacggtttgaagactggtgacgtggtagagtgcacc
gttcgtccaccacacgagggcgagaagttctttgccatgaccgatgttcgtagcatcaac
ggtcgtcacccagatgaggttcgcaaccgtgtagccttcgagcaccttacaccactgttc
cccgaggagaagttcaccctctgcggcgatcgcgccactaccaacccatcggttcgtatt
gtcgatctcttctcgccaatcggtaaaggtcagcgtgccctgattgtggcccagcctaag
accggtaaaaccgtgctcatgaaggatatcgccaacgctattgccgccaatcatcctgag
gcttatatcatgatgctgctgatcgatgagcgtcctgaggaggttaccgatatggcccgc
accgtaaatgccgaggttattgcatcaaccttcgacgagcctgccgagcgccacgtaaag
attgccggtatcgtgctcgaaaaggctaagcgtatggtagagtgtggtcacgatgtagtt
atcttcctcgattcaatcacccgtctggctcgtgcttataacaccgtagcacctacctct
ggtaagattcttaccggtggtgtggatagcaacgccctgcagaagccaaagcgtttcttc
ggagctgctcgtaacatcgagggtggtggttcgctcaccatcattgcaacagctctggtt
gatactggttctaagatggacgaggttatcttcgaggagttcaagggtacaggtaactct
gaaatccagcttaaccgctcgctggccaacaagcgcatcttcccagctatcgatatcgtg
ctgtcttcaacacgccgcgacgatctgctgcttgatgatactacacttaaccgcatgtgg
attatgcgtaagttcattgccgatatgaatcctatcgaggccatgagcaccgttcgcgat
cgtctggtaaccacccgcacaaacgaggagttcctcctgtcgatgaacggataa
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