Pyrgilauda ruficollis (rufous-necked snowfinch): 121354079
Help
Entry
121354079 CDS
T07608
Symbol
LIG4
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
pruf
Pyrgilauda ruficollis (rufous-necked snowfinch)
Pathway
pruf03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pruf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
121354079 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pruf03400
]
121354079 (LIG4)
Enzymes [BR:
pruf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
121354079 (LIG4)
DNA repair and recombination proteins [BR:
pruf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
121354079 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Tox-REase-9
Motif
Other DBs
NCBI-GeneID:
121354079
NCBI-ProteinID:
XP_041324360
LinkDB
All DBs
Position
Unknown
AA seq
912 aa
AA seq
DB search
MASAPVSQPPPKKTVASHVPFADLCSTLERIQKSKSRPEKTKYFKDFLDSWRKFHNALHQ
KEKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLSLPKDGKDAAKLLNYRTP
TGSRGDAGDFAMIAYFVLKPRSPKQGRLTIEQVNEHLDAIANNNAAKNKGQLKKSLLQLI
TQSTALEQKWLIRMIIKDLKLGVSQQTIFSIFHPDAAELHNVTTDLEKVCRQLHDPSVSL
SDVSIMLFSAFKPMLAAIADVQQIEKQMSNQTFYIETKLDGERMQMHKDGDVYKYFSRNG
FDYTQQFGASPLEGSLTPFIHNVFKSNIQNCILDGEMMAYNPEAQTFMQKGNKFDIKRMV
EDSDLQTCFCVFDVLMVNDQKLGHEVLSKRYEILSSVFTPVKGRIHVVHKRNARTRKEVI
DALNEAIDNREEGIMVKDPMSTYKPDKRGEGWLKIKPEYVSGLMDELDLLIVGGYWGKGS
RGGMMSHFLCAVAETPPPNEKPTIFHSICRVGSGYTMKELYDLGLKLAKHWKPYHRKDPP
GNILCGAEKPEMYIEPCNSVIVQIKAAEIVDSDMYKTDCTLRFPRIEKIREDKEWYECMT
SDMLEDLRNKAQGKLASKHLHVDEYDEPHEKKRKTVSKVRKVIGIAEQFKAPDLSSVSKV
SNVFEDVEFCVMTGIGKYSKSELESRIAQCGGSVVQNPGPETYCVIVGAENVRVKNIIAS
NKYDVVRAEWLLQCFQTKMLVPWQPAFMIHMSPDTKEHFAREYDCYGDSYTANTDVVQLK
EVFSRMKDNKAMPLDLIAELEERYWCNSCQLGIFRGSTIYVDCYAVVNEPQSKIPGTTLS
IKALELRFYGAEVVSHLEEGVSHVVVGEDCSRVEEMKALRRTFGKKFKIVSELWVTHSVE
EGVTKNENQYLV
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atggcttctgcacctgtttcccagcctcctcctaaaaaaacggtggcctctcacgtgcct
tttgcagatctctgttctactctcgagcgaatacagaagtccaaatcccgtccagagaaa
accaagtatttcaaggattttctggattcctggaggaaattccacaatgcacttcatcag
aaagagaaagatgtcacagattccttttacccagctatgcgtcttattctcccacagctg
gaaagagaaaggatggcatatggaattaaagaaactatgcttgcaaagctctatattgaa
ctgcttagtttaccaaaagatggaaaagatgctgcaaagcttttaaattacagaacacct
acgggctcacgtggagatgctggagattttgcaatgatcgcatactttgtgctgaaacct
aggagcccaaaacaaggcagactgacaatagaacaagttaatgaacacttagatgcaatt
gctaataataatgctgctaaaaacaagggtcagttaaagaaaagtcttcttcagctaatt
acccagagcacagcactggaacaaaaatggcttatccgaatgattataaaggatctaaag
cttggtgttagtcaacaaactatattttcaatttttcatcctgatgctgctgaattgcac
aatgttactactgatttggaaaaagtttgcagacaactgcatgatccctctgtctcgctt
agtgatgtttctatcatgttgttttctgcctttaaaccaatgcttgctgctattgcagat
gtccagcaaattgagaaacaaatgagtaaccagacattctacatagaaactaagctggat
ggtgaacgtatgcagatgcacaaagatggggatgtgtacaagtatttttcccgaaatggg
tttgactatactcagcaatttggtgcttcaccccttgaaggttcattaacaccatttatt
cataatgtatttaagagcaatatacaaaattgcattcttgatggtgaaatgatggcttac
aatcctgaggcacaaacttttatgcaaaaaggaaacaaatttgacataaaaagaatggtg
gaggactctgatctgcagacctgcttctgtgtatttgatgtattgatggttaatgatcag
aagttggggcatgaagtactaagcaaaagatatgaaatcttaagtagtgtatttaccccg
gtaaagggcaggatacatgttgtccataagagaaatgccagaacaagaaaagaagtaatt
gatgctttaaatgaagccatagataacagggaggaagggattatggtgaaagatcccatg
tccacctacaagcctgacaaacgtggggaaggctggttaaaaatcaagccagaatatgtc
agtggactcatggatgagctggaccttttaattgttggtggttactgggggaaggggtct
cgtggtggaatgatgtctcattttctatgtgctgttgcagagacgccccctccgaatgaa
aaaccgaccattttccactccatttgtcgtgttggctctggctatactatgaaagagttg
tatgatctaggcttgaaactggctaaacactggaagccttaccataggaaggaccctcct
ggtaacattttgtgtggagctgaaaaacctgaaatgtacattgaaccttgcaactctgtc
atagttcagatcaaggcagctgagattgttgacagtgatatgtataaaactgactgtact
ttgagattcccccgaattgagaagataagggaagacaaagaatggtatgagtgcatgacc
tctgacatgttagaagacctcagaaacaaagcacaaggaaagctggcgtctaagcacctt
catgtagatgagtacgatgaaccgcatgagaaaaaaaggaaaactgtttcaaaggtgagg
aaggtaattggaatagctgagcaatttaaagctcctgatctttctagtgtaagcaaggtt
tcaaatgtgtttgaagatgttgagttttgtgttatgacaggaataggaaaatactcaaag
tctgagctggaaagcagaatagcccaatgtggtggcagtgtggtacagaacccggggccg
gagacttactgtgtcattgtaggagctgagaatgtcagagtgaaaaacatcattgcttcc
aacaaatacgacgtggtgagggcagagtggctccttcagtgttttcaaaccaaaatgctg
gtgccttggcaaccagcctttatgattcacatgtctcctgacacaaaagaacattttgct
cgtgagtatgattgttatggagacagttacacagcaaacacagatgttgtgcagctcaag
gaagtgttctcaagaatgaaagacaataaggcaatgcctctggacttgattgcagagcta
gaagaacgttattggtgtaacagttgtcagcttggtatattcagaggaagcactatttat
gtggactgttacgctgttgttaatgagccccaaagcaaaatccctggaactacactatca
attaaagctttggagctccgtttttatggtgcagaagtagtttctcaccttgaagagggt
gtctcccatgttgttgtaggagaagattgttcacgggtagaagagatgaaagcactcagg
agaacatttgggaaaaaatttaaaattgtatctgagctgtgggtaacacactcagtggag
gaaggagtcacaaagaatgaaaatcagtacttagtttaa
DBGET
integrated database retrieval system
