Propioniciclava coleopterorum: G7070_04100
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Entry
G7070_04100 CDS
T06483
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
prv
Propioniciclava coleopterorum
Pathway
prv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
prv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
G7070_04100 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
prv03400
]
G7070_04100 (mfd)
Enzymes [BR:
prv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
G7070_04100 (mfd)
DNA repair and recombination proteins [BR:
prv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
G7070_04100 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
RecG_dom3_C
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
QIK71605
UniProt:
A0A6G7Y465
LinkDB
All DBs
Position
complement(842585..846055)
Genome browser
AA seq
1156 aa
AA seq
DB search
MEIAGLLELVASEPVIAQLIQHARTGTDPTLDVTCPAALRPLLAAALSADAGRPLLVVTS
TYREAENARDALASLLGEDAVAYYPAWETLPHERLSPRSDTVGRRLGVLRRIAGNAPQPA
PRVIVAPVRAVLQPQVAGLGDLRPVAVEVGRDYDIDDLAAALVGAAYVRVDLVERRGEFA
IRGGIIDVFPPTSEHPFRVDFFGDEVEEIHPFSVADQRSMEDTVPGIVADPCRELLLSDE
VRERAATLALRGDLGEQLTEMFTRIADGHAVDGMEALASVLVDRLELLVDVLPADTTVLV
SDPEKVRARALELHATSQEFLMASWAAAAEGGKAPIDLAGSAYRTLGEVRTEALGRGLGW
WTLSAYAEDPESLQILAEENEPFRGDIEAALAAIAAALAQGMSVTLVADSPGRASRLHEV
LGEHDLAGRVDIVIADLPHGFRLDKVNLQVFTSGDLSGVQGVDKAPRRMPTRRKNAIDPL
ELKPGDFVVHDAHGVGKYVEMVTRTVAGATREYLVLEYAPSKRGHPGDRLFVPMDALDQI
TRYVGGESPSLDRMGGADWNKRKTRARKAVREIAAELIKLYAARQATQGYAFGVDSPWQR
ELEDNFSYVETPDQLAAVIEVKRDMEQIVPMDRLICGDVGYGKTEIAVRAAFKAVMDGKQ
VAILVPTTLLVQQHFATFADRYAGFPVTVASLSRFQTPAESRKVMDGLADGSIDLVVGTH
RLFSNEVQFKDLGLVIVDEEQRFGVEHKEALKKMRLNVDVLSMSATPIPRTLEMAITGIR
EMSVIAAPPEERHPVLTFAGPSDDAQVRAAIRRELAREGQVFYIHNRVGTIEKAAAKIRD
LVPEANVAVAHGQMNEHTLEQVMVDFWERKADVLVCTTIVEAGLDISSANTLIIERADLL
GLSQLHQLRGRVGRGRERGYAYFLYPPDKPLTDTAHDRLATMAAHTDLGAGMAIAMKDLE
IRGAGNLLGDEQSGHIADVGFDLYIRLVGEAVADYRGEDTEPEPEMKIELAVDAHLPTDY
IESERLRLEMYKRLAAVREPADADAVRAELLDRYGALPEPVENLFAVSRFRMLCRSLGIT
EVLSAGTMIRFAPVVLTDSQDMRRARLYPGSRLNKATHQLFLPRPMTAPIAGKPVTDGPL
LEWATQALTALLGSGR
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
gtggaaatcgcgggcctgctcgagctcgtcgcgtccgaacccgtcatcgcgcagctcatc
cagcacgcgcgcacggggaccgacccgacgttggacgtcacctgcccggccgcgttgcgc
ccgctgctcgccgccgcgctgagcgccgacgccgggcggcccctgctggtggtcacctcg
acctaccgggaggccgagaacgcgcgcgacgcgctggcgtccctgctcggcgaggacgcc
gtcgcctactacccggcctgggagaccctgccgcacgagcggctctcgccgcgctcggac
accgtcgggcgccgcctcggcgtcctgcgtcggatcgccgggaacgccccgcagcccgcg
ccccgggtgatcgtcgcgcccgtccgggccgtgctgcagccgcaggtcgccggcctgggc
gacctgcgccccgtcgcggtcgaggtgggccgcgactacgacatcgacgacctggcggcc
gccctcgtgggagccgcctacgtgcgcgtcgacctggtcgagcgccgcggcgagttcgcg
atccgcggcggcatcatcgacgtgttcccacccaccagcgagcacccgttccgcgtcgac
ttcttcggcgacgaggtggaggagatccacccgttctcggtggccgaccagcgctcgatg
gaggacacggtgccgggcatcgtcgccgacccgtgccgcgaactgctgctcagcgacgag
gtccgcgagcgcgccgccaccctggcgttgcgcggcgacctgggcgagcagctcaccgag
atgttcacccgcatcgccgacggccacgccgtcgacggcatggaggcgctggcctcggtg
ctggtcgaccggctcgaactcctcgtcgacgtgctccccgccgacacgacggtgctggtg
agcgaccccgagaaggtccgcgcccgcgccctggaactgcacgccaccagccaggagttc
ctgatggcgtcctgggcggccgcggccgagggaggcaaggcgcccatcgacctggccggg
tcggcctaccgcaccctgggcgaggtgcgcaccgaggccctgggccgcgggctgggctgg
tggacgctgtccgcctacgcggaggacccggagtcgctgcagatcctcgccgaggagaac
gagcccttccgcggcgacatcgaggcggcgctggcggccatcgcggccgcgctcgcccag
ggcatgagcgtcaccctggtcgccgactctcccggccgcgccagccggctgcacgaggtg
ctcggcgagcacgacctggccggccgcgtcgacatcgtgatcgccgacctgccgcacggc
ttccgcctcgacaaggtcaacctgcaggtgttcacctccggcgacctgtccggcgtccag
ggcgtcgacaaggcgccccgccggatgccgacccgccgcaagaacgcgatcgacccgctc
gagctgaagcccggcgacttcgtcgtccacgacgcccacggcgtcggcaagtacgtcgag
atggtcacccgcaccgtcgcgggcgccacccgcgagtacctggtgctggagtacgcgccg
tccaagcggggccaccccggcgaccggctgttcgtgccgatggacgcgctggaccagatc
acccgctacgtcggcggggagtcgccgtcgctggaccggatgggcggcgccgactggaac
aagcgcaagacccgcgcccgcaaggccgtccgcgagatcgccgccgaactcatcaagctg
tacgccgcccggcaggccacccagggctacgcgttcggcgtcgacagcccctggcagcgc
gagctggaggacaacttctcctacgtcgagacgcccgaccagctcgccgccgtcatcgag
gtcaagcgcgacatggagcagatcgtccccatggaccggctcatctgcggcgacgtgggc
tacggcaagaccgagatcgcggtccgcgccgcgttcaaggccgtcatggacggcaagcag
gtcgccatcctcgtcccgacgacgctgctggtgcagcagcacttcgcgacgttcgccgac
cgctacgccggcttcccggtcacggtggcgtccctgagccggttccagaccccggccgag
tcccggaaggtgatggacgggctggccgacggctcgatcgacctggtggtcgggacgcac
cggctgttctcgaacgaggtccagttcaaggatctgggcctcgtgatcgtggacgaggag
cagcgcttcggcgtcgagcacaaggaggcgctgaagaagatgcgcctcaacgtcgacgtc
ctgtcgatgtcggcgaccccgatcccgcgcaccctggagatggcgatcaccggcatccgg
gagatgagcgtcatcgccgccccgcccgaggagcgccacccggtgctgaccttcgccggg
cccagcgacgacgcgcaggtgcgggcggcgatccgccgcgagctggcccgcgaggggcag
gtgttctacatccacaaccgggtcggcaccatcgagaaggccgccgcgaagatccgcgac
ctggtgcccgaggccaacgtcgccgtggcgcacggccagatgaacgagcacacgctggag
caggtgatggtcgacttctgggagcgcaaggccgacgtcctggtctgcaccaccatcgtc
gaggccggcctggacatctccagcgccaacaccctcatcatcgagcgcgccgacctgctc
ggcctctcccagctgcaccagctccgcggccgcgtgggccgcggccgggagcgcggctac
gcctacttcctgtacccgccggacaagccgctcaccgacaccgcgcacgaccgcctggcg
accatggccgcgcacaccgacctgggcgccggcatggcgatcgccatgaaggacctggag
atccgcggcgcgggcaacctgctgggcgacgagcagtccggccacatcgccgacgtcggc
ttcgacctctacatccggctcgtcggcgaggccgtcgccgactaccgcggcgaggacacc
gagcccgagcccgagatgaagatcgagctcgccgtggacgcacacctgccgaccgactac
atcgaatccgagcggctgcggctggagatgtacaagcggctggccgcggtccgcgagccg
gccgacgccgacgccgtccgcgccgaactgctcgaccgctacggcgcgctgcccgagccg
gtggagaacctgttcgcggtcagccggttccggatgctgtgccgcagcctcggcatcacc
gaggtgctgagcgcgggcaccatgatccggttcgcgccggtggtgctgacggactcccag
gacatgcgccgcgcccggctctacccgggatcgcgcctcaacaaggccactcatcagctg
ttcctgccccgccccatgacggcccccatcgcgggcaagcccgtcaccgacgggccgctg
ctggagtgggcgacccaggcgttgaccgcgctgctgggttccggccgctag
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