Stutzerimonas stutzeri A1501: PST_2130
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Entry
PST_2130 CDS
T00511
Name
(GenBank) DNA ligase, ATP-dependent, putative
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
psa
Stutzerimonas stutzeri A1501
Pathway
psa03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
psa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PST_2130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psa03400
]
PST_2130
Enzymes [BR:
psa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PST_2130
DNA repair and recombination proteins [BR:
psa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PST_2130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ABP79795
UniProt:
A4VLE4
LinkDB
All DBs
Position
complement(2309026..2311581)
Genome browser
AA seq
851 aa
AA seq
DB search
MALEDYQRMRDFAATPEPAGKARPKPRKSQALQYCIQKHDATRLHYDFRLELDGTLKSWA
IPKGPSLDPGVRRLAVHVEDHPLEYATFEGNIPEGHYGAGDVIVWDRGVWTPQGDPQEGY
RKGKLKFSLEGEKLAGSWNLVRTQMDGKKEQWFLIKSRDEAAREESEYDIVTAEPDSVLS
DRTLVPRKRGAKARVAETPPAPVKAPAKKRTPARRKAKVALEGAVPAELPERFKPQLATL
VDTVPVGDWRYEIKFDGYRMLARIDAGEVRLFTRNGHDWTAKMPQQAAALAGLGLESGWL
DGEVVVPNEEGTPDFQALQNAFEAGRSGSILYYLFDMPYLNGMDLREVALEQRRAALREV
LERSDSELLRFSEDFTEQPDSILESACQMKLEGLIGKRAGSTYTSRRSSSWVKIKCSNRQ
EFIIVGYTQPKGTRTGFGALLLGLHDDKGELRYAGKVGTGFNHATLQSLHKKLKKLETDK
SPLAKAPPAADARGAQWLKPELMCEVAYAEMTRQGVVRHSVFHGLRTDKPAEAITHERAK
PVARATPNVAGKADPLGSGRIKISNPERVIDPSSGITKIELARFYAQIAPWALPQLQNRP
LALVRAPEGITGELFFQKHADKLAIPHITQLDPALDPKHGALLVIDSAEALVGAAQMGTI
ELHSWNAVAPDLEHPDRFVLDLDPDPALPWKRMLEATQLTQTLLDEIGLASFLKTSGGKG
LHIVVPLDPVQDWSEVKSFSQAIARHLATLLPSHFSAVSGPKNRVGRIFIDYLRNSRGAS
TVAPYSVRAREGLPVSVPIHRDELADLKGANLWTVRNLLERLQELGDDDPWAAIGKTRQR
LTKKIRDRLNA
NT seq
2556 nt
NT seq
+upstream
nt +downstream
nt
atggcgctcgaagactaccaacgcatgcgtgacttcgccgctacgccggaacccgccggc
aaggcacggccgaagccccgcaagagccaggcgctgcagtactgcatccagaagcacgac
gccacgcgtctgcattacgacttccgcctggaactggacggcaccctgaagagctgggcg
attcccaaggggccaagcctggaccccggcgtgcgccggctggccgtacacgtggaagac
cacccgctggagtacgccaccttcgaagggaatatccccgaaggtcattatggtgccggc
gacgtgatcgtctgggatcgtggcgtgtggacgccccagggcgacccgcaggagggctat
cgcaagggcaagctcaagttcagcctggaaggcgagaagcttgccggcagctggaacctg
gtgcgcacgcagatggatgggaagaaggagcagtggttcctcatcaaatcccgtgacgag
gcggcgcgcgaggagagcgagtacgacatcgtcaccgccgagcccgacagcgtgctcagt
gaccgcaccctggtgccgcgcaagcgcggcgcgaaggcccgcgtggccgaaaccccgcct
gcgccagtcaaggcgcccgccaagaagcggacaccggccaggcgaaaggcaaaggtcgcg
ctcgagggggcggttccggccgagctaccggagcgtttcaaaccgcagctggccaccctg
gtcgatacggtaccggtcggggactggcggtacgaaatcaaattcgacggctaccggatg
ctcgcgcgcatcgacgccggcgaggtcaggctgtttacccgcaacggccacgactggacg
gcgaagatgccccagcaggccgcggcgcttgcgggactcgggctcgagtccgggtggctg
gatggcgaggtggtggtgccgaacgaggagggcacgccggacttccaggccttgcagaac
gctttcgaggcggggcgcagcggcagcattctctattacctgttcgacatgccttacctg
aacggcatggacctgcgcgaggtagcgctggagcagcgccgcgcagcgctgcgcgaggtg
ctggagcgcagtgacagcgagctgctgcgcttctccgaggactttaccgagcagccggac
agcattctggaaagcgcctgccagatgaaactcgaagggctgatcggcaagcgcgctggc
agcacctacacctcgcgacgcagtagcagctgggtgaagatcaaatgcagcaaccggcag
gaattcatcatcgtcggctatacccagcccaagggtacccgcaccggtttcggcgcgctg
ctgctcggcctgcacgacgacaagggcgagctgcgttacgccggcaaggtcggcaccggc
ttcaaccatgcaacgctgcaaagcctgcacaagaagctgaagaagctggaaaccgataaa
agcccgctggccaaggcaccgccagcagccgatgcacgtggcgcgcagtggctcaagccg
gaactgatgtgcgaagttgcctatgccgaaatgacccgtcagggtgtggtgcgccactcg
gtgttccatggcctgcgaaccgacaagccggccgaggccatcacccacgagcgggccaaa
ccagtcgccagggcaacgccgaacgtcgccggcaaggccgatcccctcggcagcggtcgg
atcaagatttccaaccccgaaagggtcatcgaccccagcagcggcatcaccaagatcgaa
ctggcccgcttctacgcgcagatcgccccttgggcgttgccgcaattgcagaaccggccg
ctggcgctggtccgcgcgcctgaaggcatcactggcgagctgttcttccagaagcacgcc
gacaagctggccatcccgcatatcacgcagctggacccggcgctcgatcccaagcacggc
gcgctgctggtgatcgacagcgccgaggccctggtcggcgccgcgcagatgggcactatc
gagctgcacagctggaacgccgtggcgcccgatctcgagcaccctgaccgcttcgtgctg
gacctcgacccggatccggccctgccgtggaagcgcatgctcgaggcgacccagctgacc
cagacgctgctggacgagatcggcctggcatcgtttctcaagaccagcggcggcaagggg
ctgcacatcgtcgtaccgctcgaccccgtgcaggactggagcgaggtgaaatccttcagc
caggcgattgccaggcacctggcaacactcctgccgtcccatttctccgcggtcagcggg
ccgaagaaccgggtcgggcgcatcttcatcgactacctgcgcaacagccgtggcgccagc
accgtcgcgccgtactcggtacgcgcccgcgagggtctgccggtttccgtacccatccac
cgcgacgagctggcggacctcaagggcgccaacctgtggacggtgcgcaacctgctggaa
cgcctgcaggaactcggtgacgacgacccctgggcggccatcggcaagacccgccagcgc
ctgaccaaaaagattcgcgaccgcctgaacgcctga
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