Paenibacillus sabinae: PSAB_04965
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Entry
PSAB_04965 CDS
T03064
Name
(GenBank) DNA polymerase LigD, polymerase domain-containing protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
psab
Paenibacillus sabinae
Pathway
psab03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
psab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PSAB_04965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psab03400
]
PSAB_04965
Enzymes [BR:
psab01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PSAB_04965
DNA repair and recombination proteins [BR:
psab03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PSAB_04965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
AHV95929
UniProt:
X4ZW24
LinkDB
All DBs
Position
complement(1139727..1140611)
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AA seq
294 aa
AA seq
DB search
MPAAIKGSITIEGQSVTITNPDKPLWPEQSITKRIYLEKLAALSPYLLRYLRNRLLTVIR
YPHGVEGKSFYQKNAPEPLPPFIRTVIHEDINYISLDGLPGLLWLGNLAALEFHPSLHYA
GSSLPCEWMIDLDPSREVEPRIMEATAIVGEVLKSLGLSSVPKTSGATGVQIIVPIKQGV
TFDELRKVGHLVGRYVTEKHPGLFTLERLKKQRGDKIYFDYLQHYRGKTLAAPYTPRARP
LATVSTPLTWDEVIRNVSPEEFHLLNIEERLRVMGDLIEQLPPQPIELVIAGLR
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
atgccagccgccatcaaaggctccattacgatcgaaggacaatcggtcaccattaccaat
cccgacaagccgctgtggccggaacagagtatcaccaagcgcatctatttggagaagctt
gccgccctttcgccctatctgctccgctatttgaggaaccggctcctgacagtgatccgc
taccctcatggagtggagggcaagtccttttatcaaaagaacgcgcctgaaccgctgccg
ccctttatccgcaccgttatacacgaagacattaactatatttcactggacgggcttccg
gggctgctctggctcggcaatctggccgcgctggagttccatccttcgcttcattacgcc
ggaagcagccttccttgcgaatggatgatcgaccttgatccatcccgcgaggtggagccc
cggattatggaagcgacggcgattgtcggtgaggtgctgaaatccctcgggctctcctcg
gttccgaagacgtcgggagcgaccggagtgcagattattgtgccgatcaagcagggagtt
acgtttgacgagcttcggaaggtcgggcatctggtcggccgttatgttaccgagaagcat
cccgggctgttcacactggagcggctgaagaaacagcgtggcgacaaaatctacttcgat
tacctccagcattaccgcggcaaaacgctggccgccccctataccccccgtgcccgcccg
ctggcgaccgtatcgacgccgcttacttgggacgaggttatcaggaacgtctcccctgag
gaattccatctactgaatattgaagaacgtctgcgcgtcatgggggatctgatcgagcaa
ttgcccccgcagccgattgagcttgtcatcgccggccttcggtag
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