Pseudomonas salmasensis: HU731_001245
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Entry
HU731_001245 CDS
T07619
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
psam
Pseudomonas salmasensis
Pathway
psam03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
psam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HU731_001245 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psam03400
]
HU731_001245 (ligD)
Enzymes [BR:
psam01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HU731_001245 (ligD)
DNA repair and recombination proteins [BR:
psam03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HU731_001245 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QXH78473
UniProt:
A0AA92MVF5
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All DBs
Position
complement(309468..311978)
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AA seq
836 aa
AA seq
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MAKPLSEYNRKRDFKITAEPAGSSPSKRKASALSFVIQKHDARNLHYDFRLELDGVLLSW
AVPKGPSLDPSQKRLAVHVEDHPLSYGSFEGSIPAGQYGAGDVIVWDRGIWQPHDDPRKA
YAAGKLKFTLIGEKLSGDWALVRTRLKGSGDKEQWLLIKENDQQARPAAEFDIVEAEPAS
VLSDAVVGKPKAKPKPRAATKAKAPKPSAALPDEFAPQLATLVDRAPEGDWRYEIKFDGY
RIMARIRDGEVRLFTRNGHDWTERLPRQCKALQALKLKDSWLDGEVVSLNGDGLPDFQAL
QNAFDIGRSLDIVYYLFDAPFLNGRDQREDPVEERRAALKSALSGSRSKLLRFSEAFAAS
QRDIFESACDLALEGVIGKRAGSPYVSRRSDNWIKLKCRLRQEFVIVGYTRPQGSRSGFG
ALLLAVNDDTGLVYAGRVGTGFDQAALKSIYARLTPLERKDSPLQKPLTSAQARGVHWVE
PSLVGEVQFAEWTREGVVRQAAFVGLRTDKPASQIIHEQPRAAKSVKTPQTSKAGKAQAT
VKNVKITHPERIIDKHSGTQKQQLAQFYTDISEWILPFLRARAVSLLRAPEGIEGEQFFQ
KHSERMAIPHIKQLDPALDPGHARLMEIDSVDALVGAVQMGTIEFHTWGATADKIETPDL
FVLDLDPDPALPWKAMLEAAQLTLSVLDELGLQAFVKTSGGKGLHLIVPLARRDGWDTVK
AFAKAIAQFMTRQLPERFTATSGPKNRVGKIFIDYLRNARGASTVAAYSVRARPGLPVSV
PVSREELKGLRGAQQWTVANLHQRLQTLKDDPWAGYANRQKISKKMWDKLGAEPPG
NT seq
2511 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagcccctgagcgagtacaaccgcaagcgtgatttcaagatcaccgccgaaccc
gccggcagctcacccagcaaacgtaaagcctcggccctaagctttgtgattcaaaagcac
gatgcgcgcaacctgcattacgactttcgcctggaacttgatggcgtgctgttgagctgg
gcggtgcccaagggcccaagcctggacccgagtcagaaacgcctcgcggtgcatgtggaa
gaccacccactgagctacggcagtttcgagggcagcattcccgccggccaatacggtgcg
ggggatgttatcgtgtgggaccgaggcatctggcaaccccacgatgacccgcgcaaggcc
tatgcggcgggcaaactcaaattcaccctgatcggtgagaagctctccggtgactgggct
ctggtacgaacccggctcaagggcagcggcgacaaggagcaatggctgttgatcaaagaa
aacgatcagcaagcgcgcccggcggctgaattcgatattgtcgaggccgaacccgccagc
gtgctcagcgatgcggtggtgggtaagccaaaagccaaacccaaacccagggccgcgact
aaagccaaagcgcccaagcccagcgcggccctgcctgatgagttcgcccctcaattggca
accttggtcgaccgtgccccggaaggtgactggcgctacgagatcaagttcgacggctac
cgcatcatggcgcgcattcgcgacggtgaagtgcgcctgttcacccgcaacggccacgac
tggaccgagcgcctgccgcgtcagtgcaaagccttgcaggccctcaagctcaaggacagc
tggctggatggcgaagtggtcagcctcaatggcgacgggttgccggatttccaggcgttg
caaaacgcattcgatatcggccgcagcctggacatcgtctattacctgttcgacgccccg
tttttgaacggtcgcgaccaacgcgaagacccggtcgaagagcgtcgcgctgcgctcaaa
tccgcattgtccggcagccgaagcaaactgctgcgcttctccgaagcctttgccgccagc
cagcgcgatattttcgaaagcgcctgtgacctggcgctcgaaggtgtgatcggcaagcgt
gctggcagcccctacgtgtcgcggcgcagtgacaactggatcaagctcaaatgccgcctg
cgccaggaattcgtgatcgtcggctacacccgcccccaaggttcgcgcagcggctttggt
gcgctgctactggcggtcaacgatgacaccggcctggtctatgccgggcgcgtaggcacg
ggctttgatcaggcggcgctgaaaagtatctatgcgaggctcaccccgcttgagcgcaag
gactcgccactgcaaaagccgttgaccagtgcccaggcccgtggcgtgcactgggttgag
ccgagcctggtaggcgaagtgcaatttgccgaatggacccgtgaaggcgtggtgcgccag
gccgcctttgtgggcctgcgtaccgacaagccagcctcgcaaatcattcatgaacagccg
cgcgcggccaagtccgtcaagacaccccagacatcaaaagccggtaaagcccaggcaacg
gtgaagaacgtgaaaatcactcaccccgagcgcattatcgacaagcacagcggcacgcaa
aaacagcaattggcgcagttctacaccgatatcagtgaatggatactgcccttcctgcgc
gcacgtgcggtgtcactgctgcgggcgccggaagggatcgaaggtgagcagttcttccag
aagcactcagagcgcatggccattccccatatcaagcaattggacccggcgctggatcca
ggccacgctcgcctgatggaaatagacagcgtggatgccctggtcggcgccgtgcaaatg
ggtacgatcgagtttcacacctggggggccaccgcagacaagatcgaaacgcctgacctg
tttgttctcgacctcgacccggacccggccctgccttggaaagccatgctggaagcggcc
caactgaccctgtcagtactcgatgagctgggcttgcaagccttcgttaaaaccagcggc
ggcaagggcttgcatttgatcgtgccgttagcccggcgcgatggctgggacaccgtgaag
gcgttcgccaaagccattgcccaattcatgacccggcaactgcccgaacgctttaccgcc
accagcggccccaagaaccgcgtgggcaagatctttatcgattacctgcgcaacgcccgt
ggcgccagtaccgtggcggcgtattcagtgcgggcacgcccaggcttgccagtgtcggtg
ccggtgagtcgagaggagttgaaagggttgcgcggcgcccaacagtggaccgtggcgaac
ctgcatcagcggctacaaacgttgaaggacgacccgtgggcggggtatgccaatcggcag
aagatcagcaaaaagatgtgggacaagctgggcgcggagccacctgggtga
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