KEGG   Pseudomonas salmasensis: HU731_001245
Entry
HU731_001245      CDS       T07619                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
psam  Pseudomonas salmasensis
Pathway
psam03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:psam00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    HU731_001245 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:psam03400]
    HU731_001245 (ligD)
Enzymes [BR:psam01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     HU731_001245 (ligD)
DNA repair and recombination proteins [BR:psam03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     HU731_001245 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Other DBs
NCBI-ProteinID: QXH78473
UniProt: A0AA92MVF5
LinkDB
Position
complement(309468..311978)
AA seq 836 aa
MAKPLSEYNRKRDFKITAEPAGSSPSKRKASALSFVIQKHDARNLHYDFRLELDGVLLSW
AVPKGPSLDPSQKRLAVHVEDHPLSYGSFEGSIPAGQYGAGDVIVWDRGIWQPHDDPRKA
YAAGKLKFTLIGEKLSGDWALVRTRLKGSGDKEQWLLIKENDQQARPAAEFDIVEAEPAS
VLSDAVVGKPKAKPKPRAATKAKAPKPSAALPDEFAPQLATLVDRAPEGDWRYEIKFDGY
RIMARIRDGEVRLFTRNGHDWTERLPRQCKALQALKLKDSWLDGEVVSLNGDGLPDFQAL
QNAFDIGRSLDIVYYLFDAPFLNGRDQREDPVEERRAALKSALSGSRSKLLRFSEAFAAS
QRDIFESACDLALEGVIGKRAGSPYVSRRSDNWIKLKCRLRQEFVIVGYTRPQGSRSGFG
ALLLAVNDDTGLVYAGRVGTGFDQAALKSIYARLTPLERKDSPLQKPLTSAQARGVHWVE
PSLVGEVQFAEWTREGVVRQAAFVGLRTDKPASQIIHEQPRAAKSVKTPQTSKAGKAQAT
VKNVKITHPERIIDKHSGTQKQQLAQFYTDISEWILPFLRARAVSLLRAPEGIEGEQFFQ
KHSERMAIPHIKQLDPALDPGHARLMEIDSVDALVGAVQMGTIEFHTWGATADKIETPDL
FVLDLDPDPALPWKAMLEAAQLTLSVLDELGLQAFVKTSGGKGLHLIVPLARRDGWDTVK
AFAKAIAQFMTRQLPERFTATSGPKNRVGKIFIDYLRNARGASTVAAYSVRARPGLPVSV
PVSREELKGLRGAQQWTVANLHQRLQTLKDDPWAGYANRQKISKKMWDKLGAEPPG
NT seq 2511 nt   +upstreamnt  +downstreamnt
atggcaaagcccctgagcgagtacaaccgcaagcgtgatttcaagatcaccgccgaaccc
gccggcagctcacccagcaaacgtaaagcctcggccctaagctttgtgattcaaaagcac
gatgcgcgcaacctgcattacgactttcgcctggaacttgatggcgtgctgttgagctgg
gcggtgcccaagggcccaagcctggacccgagtcagaaacgcctcgcggtgcatgtggaa
gaccacccactgagctacggcagtttcgagggcagcattcccgccggccaatacggtgcg
ggggatgttatcgtgtgggaccgaggcatctggcaaccccacgatgacccgcgcaaggcc
tatgcggcgggcaaactcaaattcaccctgatcggtgagaagctctccggtgactgggct
ctggtacgaacccggctcaagggcagcggcgacaaggagcaatggctgttgatcaaagaa
aacgatcagcaagcgcgcccggcggctgaattcgatattgtcgaggccgaacccgccagc
gtgctcagcgatgcggtggtgggtaagccaaaagccaaacccaaacccagggccgcgact
aaagccaaagcgcccaagcccagcgcggccctgcctgatgagttcgcccctcaattggca
accttggtcgaccgtgccccggaaggtgactggcgctacgagatcaagttcgacggctac
cgcatcatggcgcgcattcgcgacggtgaagtgcgcctgttcacccgcaacggccacgac
tggaccgagcgcctgccgcgtcagtgcaaagccttgcaggccctcaagctcaaggacagc
tggctggatggcgaagtggtcagcctcaatggcgacgggttgccggatttccaggcgttg
caaaacgcattcgatatcggccgcagcctggacatcgtctattacctgttcgacgccccg
tttttgaacggtcgcgaccaacgcgaagacccggtcgaagagcgtcgcgctgcgctcaaa
tccgcattgtccggcagccgaagcaaactgctgcgcttctccgaagcctttgccgccagc
cagcgcgatattttcgaaagcgcctgtgacctggcgctcgaaggtgtgatcggcaagcgt
gctggcagcccctacgtgtcgcggcgcagtgacaactggatcaagctcaaatgccgcctg
cgccaggaattcgtgatcgtcggctacacccgcccccaaggttcgcgcagcggctttggt
gcgctgctactggcggtcaacgatgacaccggcctggtctatgccgggcgcgtaggcacg
ggctttgatcaggcggcgctgaaaagtatctatgcgaggctcaccccgcttgagcgcaag
gactcgccactgcaaaagccgttgaccagtgcccaggcccgtggcgtgcactgggttgag
ccgagcctggtaggcgaagtgcaatttgccgaatggacccgtgaaggcgtggtgcgccag
gccgcctttgtgggcctgcgtaccgacaagccagcctcgcaaatcattcatgaacagccg
cgcgcggccaagtccgtcaagacaccccagacatcaaaagccggtaaagcccaggcaacg
gtgaagaacgtgaaaatcactcaccccgagcgcattatcgacaagcacagcggcacgcaa
aaacagcaattggcgcagttctacaccgatatcagtgaatggatactgcccttcctgcgc
gcacgtgcggtgtcactgctgcgggcgccggaagggatcgaaggtgagcagttcttccag
aagcactcagagcgcatggccattccccatatcaagcaattggacccggcgctggatcca
ggccacgctcgcctgatggaaatagacagcgtggatgccctggtcggcgccgtgcaaatg
ggtacgatcgagtttcacacctggggggccaccgcagacaagatcgaaacgcctgacctg
tttgttctcgacctcgacccggacccggccctgccttggaaagccatgctggaagcggcc
caactgaccctgtcagtactcgatgagctgggcttgcaagccttcgttaaaaccagcggc
ggcaagggcttgcatttgatcgtgccgttagcccggcgcgatggctgggacaccgtgaag
gcgttcgccaaagccattgcccaattcatgacccggcaactgcccgaacgctttaccgcc
accagcggccccaagaaccgcgtgggcaagatctttatcgattacctgcgcaacgcccgt
ggcgccagtaccgtggcggcgtattcagtgcgggcacgcccaggcttgccagtgtcggtg
ccggtgagtcgagaggagttgaaagggttgcgcggcgcccaacagtggaccgtggcgaac
ctgcatcagcggctacaaacgttgaaggacgacccgtgggcggggtatgccaatcggcag
aagatcagcaaaaagatgtgggacaagctgggcgcggagccacctgggtga

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