Pisum sativum (pea): 127105271
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Entry
127105271 CDS
T08598
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB2 isoform X1
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
psat
Pisum sativum (pea)
Pathway
psat03022
Basal transcription factors
psat03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psat00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
127105271
09124 Replication and repair
03420 Nucleotide excision repair
127105271
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psat03021
]
127105271
03400 DNA repair and recombination proteins [BR:
psat03400
]
127105271
Transcription machinery [BR:
psat03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
127105271
DNA repair and recombination proteins [BR:
psat03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
127105271
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
MetRS-N
Motif
Other DBs
NCBI-GeneID:
127105271
NCBI-ProteinID:
XP_050898394
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Position
7:194845460..194850682
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AA seq
452 aa
AA seq
DB search
MPEVRIIAKNFMDMVASMPAMKLDKLYENGFICEAILRSLPPLAKKYVLQLLHIDGAVLA
RLFAEWVLPDGLSKHKVAIDRLVQLRLFVEALDSRKNEKTYKLNSTYQRSLQQLLVHGGT
LPRESMPSNITVRLPTLEDLETYALEQWECFLLQLISPSHADKTLNISSSLMKVFQRRLL
SQRDREAPKLTESGFQFLLMDTNAQLWYIIREYISNSEERGVDAGDLISFMLELSFHVIG
EAYNINTLTDFQRNIIKDLADLGLVKLQQGRKESWFIPTKLATNLSVSFTESSSRKEGFV
VVETNFRVYAYSTSKLHCEILRLFSRVEYQLPNLIVGAITKETLYNAFDNGITADQIVSF
LRQNAHPRVAQRIPAVPDNVTDQIRLWESDINRVEMTEAYYYDEFPSRDVFEGACDCARE
WNGLLWEDSKKMHLVVKSEVHSYVRDFLRRQK
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaggttagaatcattgccaagaatttcatggacatggtggcttcaatgcctgcc
atgaagcttgataaactctacgagaatggattcatctgcgaagctattctcaggtcactt
ccgcctcttgcgaagaaatatgtcttacagctgctgcatattgatggagcagtcttagct
agattgtttgcagaatgggtgttgccagatggactttcaaagcacaaagttgccattgat
agattggttcaattgagacttttcgttgaagctcttgatagcaggaagaacgaaaaaact
tacaaacttaattcaacatatcagagaagtctccagcaacttttagtacatggcggaact
ttgccgagggaatcgatgccttctaatattactgtgaggctcccgaccttagaggatctt
gagacttatgctctggaacaatgggagtgtttcttgttgcaacttataagcccaagtcat
gctgacaagaccttaaatataagctcttctttgatgaaagttttccagcggcgtctcctg
agtcagagagacagagaagctccaaaattaactgaaagtggtttccagtttttgcttatg
gatacaaatgcacagctttggtacatcatcagagaatatatatctaattctgaggaaaga
ggtgttgatgcaggtgacttgatctcattcatgcttgagcttagttttcatgtaattggg
gaggcatacaatataaacacattgactgatttccagaggaacataattaaggacctagca
gaccttgggctggtcaaacttcaacagggcagaaaagaaagttggtttataccaacgaaa
ttggcaacaaatctttcagtgagctttaccgaatcatcatcaagaaaggagggatttgtt
gttgtggaaacaaattttagagtttatgcttattcgacttcaaaattacattgtgagata
ttgcggctattctcaagggtagagtatcagcttccaaatcttattgttggagctattaca
aaagaaactttgtataacgcttttgacaatggcattacagcagaccagatagtcagtttc
cttcggcagaatgcccatcctcgtgttgcacagaggataccagctgtgccggacaatgtc
acagatcagattaggctgtgggaatcagatataaacagagttgagatgacagaagcatat
tattatgacgagttcccatccagggatgtatttgaaggtgcgtgtgactgtgccagagaa
tggaatggtttattatgggaagattcaaagaagatgcatttggtggttaagtctgaggtt
cattcttacgtgcgggattttttacgccgccaaaagtag
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