Pisum sativum (pea): 127136928
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Entry
127136928 CDS
T08598
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
psat
Pisum sativum (pea)
Pathway
psat03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
psat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
127136928
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psat03400
]
127136928
Enzymes [BR:
psat01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
127136928
DNA repair and recombination proteins [BR:
psat03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
127136928
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
BRCT
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
T_Ag_DNA_bind
HI0933_like
Motif
Other DBs
NCBI-GeneID:
127136928
NCBI-ProteinID:
XP_050919397
LinkDB
All DBs
Position
1:complement(366857440..366878530)
Genome browser
AA seq
1169 aa
AA seq
DB search
MTEQTKFSVLCSLLTWTQRTKSPPKKRAKFRKFLDSFCPDRNYFPAIRLILPNLDRERGS
YGLKESVLATSLIDALGMSKDSPDAIRLINWRKGGSKTGANAGNFALVATEVLQLRQGTA
SGGLTIKELNDLLDQLSSSENRGEKTLVLSTLIQKTNAQEMKWIIMIILKDLKLGISEKS
IFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRHKRQDIEVGKAVRPQLAKRVANAAEAWK
KLHGKEVVAECKFDGDRIQIHKNGTEIHFFSRNFLDHSEYAHAMSEIIIQNILVDRCILD
GEMLVWDTSLNRFAEFGSNQEIAKAARDGLDSNRQLCYIAFDILYFGDTSVIHQTLKERH
EILRKVVRPLNGRLEILLPNNGGINSHRPSGEPCWSLTAQNADEVERFFKETIENRDEGI
VVKDLSSKWEPSDRSGKWLKLKPEYVQAGSDLDVLIIGGYYGSGRHGGEVAQFLVGLAER
SSPNTHPKRFVSFCRVGTGLSDDELEAVVTKLKPYFRKYEYPKKRPPSFYQVTNHSKERP
DVWVDSPEKSIILSITSDIRTIESEVFSAPYCLRFPRIDRVRYDKAWHECLDVQSFIELV
QSSNGTTQRDTEYGNKMGSKQKHMKSSIKGEKKNVLIVPSHLSQTDVSSVKGGSLMFSNM
MFYFVNVPPSHSLESFHKLVAENGGTFSMNLNNSVTHCVAADSKGFKFEAAKRRGDIIHY
TWVLDCYAQKKLIRLQPKYFLFLSEETKKKLQEEIDEFSDSYYLDLNLGDIKQLLGNINR
SEDVSTVDHYRKKYCPKDKWSVFNGCSIYFKNTMQSLKEDWQYLLELSSKRLKLEVLMGG
GKYTSNLNFATHVVALFTPSYHTNYEEEIQSSFTSIERKLFRSKRLHVVNSKWLEDCLNS
CQRLSEDTYSLKSYGIEESTAEDCEHDLAVDAHLVEDNVGNQNESFSNKGSKQSSAKAVS
QDSLGLASQGAHGQRKRGRPASRGVKKIKPDGNQARRARSQIAKKRAKISEYESDESDSL
EKRPYEQEVDITEGSSGFHNEQSELHETEKTRNVQGTEGVEISEQNKKVELEDFNYNQDE
NMLAPEIGLDDGHNDQSSQVTEKLEIMTDPMQAMLLDMIPSLAMNKVEQPTNHRVEEEKR
REISKEEPSGTKKKKVSFKAMAADLLKDW
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgacagagcaaaccaagttcagcgtattatgcagtctattaacatggacacaacgaacc
aaatcaccgccgaagaaacgcgccaagttccggaagtttctcgactctttctgtcccgat
cggaactacttccccgctattcgcctcattcttcctaaccttgatcgtgaacgaggctcc
tacggtctcaaagagtccgttctcgctacttccctcattgacgctcttggaatgtctaag
gattccccagatgctattcggcttatcaattggcggaaaggtggttccaaaactggtgct
aatgccggtaatttcgcacttgtcgccaccgaggtgctgcagcttagacaaggtactgct
tcgggtggattgacgataaaggagttgaatgatttgctagatcaattgtcttcaagtgaa
aacaggggtgagaagactttggttctttcaacccttatccaaaagacaaacgcacaggag
atgaagtggatcatcatgataatcctgaaagatttgaagctaggaattagtgaaaaaagc
atttttcatgaattccatccagatgctgaagacttgtttaatgttacatgtgacttaaaa
ttagtttgtgaaaaactaagggataggaaccaacgtcataagcggcaggatattgaagtt
ggaaaggctgtgcgtcctcaattagctaagagagttgctaacgcagctgaagcatggaag
aagcttcatggtaaggaagtagttgctgagtgcaaatttgatggtgatcgcattcaaatt
cataaaaatggaaccgagatacatttcttctcaaggaactttcttgatcattctgaatat
gcacatgcgatgtcagaaatcataatacaaaatattcttgtagatagatgcatacttgat
ggtgaaatgttggtctgggatacatccttgaatcgttttgctgagtttggctctaatcag
gaaatagccaaggcagcaagggatggacttgatagtaatagacagttatgctacattgca
tttgatatcctttattttggagatactagtgtaattcaccaaactttaaaggagcggcat
gagattctacgtaaagttgtgaggccattgaatggtcgtttggaaattttactacctaat
aatggtggtatcaacagtcatcggccttctggtgaaccatgttggtcccttactgctcaa
aatgcggatgaagttgaaagatttttcaaagaaaccattgaaaatagagacgaaggaatt
gtagtaaaagacctcagctctaaatgggagcccagtgaccgcagtggaaaatggctgaaa
ttgaagcctgaatacgttcaagctggctctgatctggatgtacttataataggtggctac
tatggttccggacgacatgggggagaggttgctcaattcttggtgggccttgcagagcgt
tcatccccaaatacacatcccaaacggtttgtctccttttgcagagttggtactggactt
tctgatgacgagcttgaagcagtagtaaccaaactgaaaccttacttcagaaagtatgag
tatccaaagaagaggccaccgagtttttatcaagttactaatcattccaaagaaagacct
gatgtgtgggtcgatagccctgaaaaatcaattattctgtctataaccagtgatatccga
actatagaatctgaggtattctctgcaccttactgtctgagatttcctcggattgacagg
gtgagatatgacaaggcttggcatgagtgccttgatgtacaatcatttatagaattggtg
caatctagcaatggtaccacacagagggatacagaatacgggaacaagatgggcagtaaa
caaaaacacatgaaatcctctataaagggagaaaagaaaaatgtgttaattgttccttct
catttaagtcaaacagatgtttccagtgttaagggaggttccttaatgttttcaaatatg
atgttctattttgtcaatgtccctccatctcattctctcgagtccttccacaaattagtt
gctgagaatggcggcactttctcaatgaatttgaataactcagtcacccattgtgttgca
gcagacagcaaggggtttaaatttgaagcagcaaaacgtcgtggtgatatcattcattat
acctgggtactagattgctatgcacaaaagaaactcatccgcttacagccgaaatacttc
ctcttcctatctgaagagaccaagaagaagctacaagaagaaattgacgagttctcggac
tcttactacttggatctcaatcttggagacatcaaacagctcttaggcaatattaatagg
tcagaagatgtcagtactgtcgatcattacaggaaaaaatactgcccaaaggataagtgg
tctgtcttcaatggatgctccatttatttcaaaaacacaatgcaatcattgaaagaagat
tggcaatatttattggaactttcttcaaagagactcaagcttgaagttctcatgggtggt
ggaaaatacacctctaatctcaattttgcaactcatgtagtggctttgttcacaccaagt
tatcataccaactatgaagaagaaatacagagcagtttcacttcaattgagagaaaacta
ttccggagcaagaggttgcatgtagttaattccaagtggttagaagattgtttgaacagt
tgccaaagattatcagaggacacgtatagcttgaagtcctatggaatagaagagtcaact
gctgaggattgtgaacatgacttggcggtggatgctcatctggttgaagataatgtagga
aaccaaaatgaatctttctctaataagggaagtaaacagagtagtgcaaaagctgtttct
caagacagtttgggtttggcatcacaaggggcccatggtcaaaggaaacgaggaagacct
gcaagcagaggtgttaaaaaaataaaaccagacggaaaccaagctcgaagagcaagatca
cagattgcaaaaaaacgcgctaaaataagtgaatatgaatcagatgaaagtgattctctt
gagaaaagaccatatgagcaagaggttgacattacagaaggaagttctggatttcacaat
gaacagtcagaactacacgagactgagaaaactcgcaatgtccaaggtactgaaggagta
gaaatttctgaacaaaacaagaaagttgagctagaggatttcaactacaaccaagatgaa
aatatgctggctcctgaaatcggattggatgatgggcacaatgaccaaagcagtcaggtg
actgagaagcttgaaattatgactgatcctatgcaggcaatgttacttgatatgattcct
agtcttgctatgaataaagttgagcaacctacgaatcatcgtgttgaagaggagaagcga
cgggaaatctccaaggaagagccttcgggtacaaagaaaaagaaagttagtttcaaggct
atggctgctgacttgctcaaggattggtag
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integrated database retrieval system
