Pseudomonas savastanoi pv. savastanoi: PSA3335_13010
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Entry
PSA3335_13010 CDS
T07948
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
psav
Pseudomonas savastanoi pv. savastanoi
Pathway
psav03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
psav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PSA3335_13010 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psav03400
]
PSA3335_13010 (ligD)
Enzymes [BR:
psav01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PSA3335_13010 (ligD)
DNA repair and recombination proteins [BR:
psav03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PSA3335_13010 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ARD11922
LinkDB
All DBs
Position
2837085..2839685
Genome browser
AA seq
866 aa
AA seq
DB search
MAKPASEYTRKRNFAITSEPAESTRKGKSSSKAKALGFVIQKHDARNLHYDFRLELDGTL
KSWAVPKGPSLDPKQKRLAVHVEDHPLDYADFEGSIPKGQYGGGDVIVWDRGVWQPHGDP
QKTYEEGKLKFTLVGEKLSGDWALVRTRLTGSGSKEQWLLIKEKDAIARPAAEYDITLEQ
PQSVISGAHLGAGRAAPAKPKASAANEKAKAGAAKPARKPAQKKSKTVFPETLSPQLATL
VDAPPAGDWLYEIKFDGYRILTRIQGDEVRLFTRNGHDWTERLPELVKALKGLKLQNSWF
DGEVVVLDEQGLPDFQGLQNAFDAGNSKNILYYLFDMPFLSAEDLREVPLEQRRDALKQV
LDAQRSRLLRYSDAFQAGHQDIVESAAAMGLEGVIGKRAGSVYIGKRNADWIKLKCRLRQ
ELVIVGYTAPQGSRSAFGALLLAVNEGDEGLVYAGRVGTGFSEVTLEQPYQQLKPLQRKD
SPLAKKLTSAQARGVQWVEPQLVCEAEFAQWTREGIVRQAAFVGLRSDKPASEVVREDAQ
PARVASQTRTQSTSAAPRSGKKTAAGKGKVDVAGTGISHPDRVIDSKTGTSKVELAQFYA
SIAEWILPYLNKRPVALLRCPEGIDGEQFFQKHAEHLAIPHIKQLDRALDPGHAALMEID
SLQALVGAAQMGAIELHTWGATRDRIETPDHFVLDLDPDPALPWRSMIEATQMVLAVLEE
LGLEAFLKTSGGKGMHIIVPLARQADWDTVKAFSKAIAEFVSRQLPERFTATMGPKNRVG
KIFIDYLRNSRGGSTVTAYSVRARPGLPVSVPIAVDELAGLKSSAQWDITNLAQRLKKLK
ADPWAGYSNRRKITQKMWKQLGAKRP
NT seq
2601 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcccgccagtgaatacacgcgcaagcgcaatttcgccatcacctccgagcct
gccgaaagcacgcgcaaaggcaagtcttcgtccaaggccaaggcgctgggtttcgtgatt
cagaagcatgacgcacgcaacctgcactacgactttcgactggagctggatggcacgctc
aagagctgggcggtgcccaaaggcccgagcctggaccccaagcaaaaacgtctggcggtg
catgttgaagaccacccgctggactatgccgattttgagggcagcatcccgaaagggcag
tacggcggcggtgatgtgattgtctgggaccgtggcgtctggcagccgcacggtgatccg
caaaaaacctatgaggaaggcaaactcaaatttaccctggtcggcgagaagctcagcggc
gactgggcgctggtgcgcacgcggctcacgggcagcggcagcaaggagcagtggctgctg
atcaaagaaaaggacgccattgcgcgacctgccgccgaatatgacatcactctggagcag
ccgcagagcgtgatcagcggcgcgcacctaggggcagggcgtgcagcgccagcgaagcca
aaagccagcgccgcaaacgaaaaagccaaagccggtgcagcgaagcctgcgcgcaagccc
gcgcaaaagaagtcgaaaacggttttcccggaaaccctttcgccgcaactggccacgttg
gtagatgcaccgccagcgggtgactggctgtatgagatcaagttcgatggctatcgcatt
ctgacccgcattcagggcgacgaagtgcgcctgttcacccgtaacggccacgactggacc
gaacggctgcccgagctggtcaaggcgctcaagggcctgaaattgcaaaacagttggttc
gacggcgaagtagtggttctcgacgagcaagggttgcccgactttcaggggttgcagaat
gcctttgacgcagggaacagcaaaaacatcctgtattacctgttcgatatgccgttcctg
agtgcggaggatctgcgtgaagtaccccttgagcagcgccgcgacgccttgaagcaagtg
ctcgacgcccagcgcagtcgcttgctgcgttattcggatgcgtttcaggccgggcatcag
gatattgtggaaagcgctgcggcaatgggcctggaaggtgtcatcggcaagcgggccggc
agtgtttatatcggcaagcgcaacgccgactggatcaaactcaaatgccggttgcgtcag
gaactggtgatcgtcggctacaccgccccgcaaggcagccgctcggccttcggagccttg
ttgctggcggtcaatgagggcgatgaaggactggtctatgccgggcgggtgggcaccggc
ttcagtgaggtgacgcttgaacagccttatcaacaactcaaaccgctgcagcgcaaggat
tcacctctggcgaaaaagctgacctcggctcaggcccgtggcgtgcagtgggtagagccg
caactggtctgtgaggcggagttcgcccagtggacccgcgaaggcattgtgcgacaagcc
gcatttgtcgggttgcgcagtgacaagcctgccagtgaggtggtgcgcgaagacgctcag
cccgccagggttgccagccagacccggacgcaatcgacatcggcagcgccgcgttcaggc
aagaaaaccgctgccggcaaaggcaaagtagacgttgcgggcaccggcatcagccatccg
gatcgggtgatcgacagcaagaccggcaccagcaaggtcgaacttgcgcagttctacgcg
tctattgccgaatggattctgccgtatctgaacaagcgtcctgtggcattgttgcgttgc
ccggaaggcatcgacggcgagcagttcttccagaagcacgccgagcatcttgcgattcca
cacatcaaacagctggatcgtgctctggaccccgggcatgccgcgctgatggagatcgat
tcattgcaggcgctggtcggtgccgcgcaaatgggggccatcgagttgcacacctggggc
gctacgcgtgacaggatcgaaacgccggatcattttgtactggaccttgatcccgacccg
gcgctgccctggcgcagcatgatcgaagccacgcaaatggtgctcgccgtgctggaggaa
cttgggctggaagcttttctcaagaccagcggcggcaagggcatgcacatcatcgtgcca
ttggcgcggcaggctgactgggacacggttaaagccttctccaaggctatcgccgaattc
gtcagccgtcagttgcccgaacgcttcaccgcgaccatggggccgaaaaaccgggtaggg
aaaattttcattgattacctgcgcaacagccgtggcggaagcaccgtgactgcatattcg
gtgcgcgcccggccaggtttgccggtctcggtgccgattgctgtggatgaactggcaggc
ctgaaatcctcggcgcagtgggacatcaccaaccttgcgcagcgtttaaagaaactcaag
gccgacccgtgggcaggctacagcaaccgccgcaaaatcacgcaaaagatgtggaagcag
ttgggggcgaaacggccctga
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