Pseudoalteromonas sp. A25: PA25_09060
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Entry
PA25_09060 CDS
T07990
Symbol
csdA
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
psaz
Pseudoalteromonas sp. A25
Pathway
psaz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psaz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PA25_09060 (csdA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psaz03019
]
PA25_09060 (csdA)
03009 Ribosome biogenesis [BR:
psaz03009
]
PA25_09060 (csdA)
Enzymes [BR:
psaz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PA25_09060 (csdA)
Messenger RNA biogenesis [BR:
psaz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PA25_09060 (csdA)
Ribosome biogenesis [BR:
psaz03009
]
Prokaryotic type
rRNA helicases
PA25_09060 (csdA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrD-helicase
P-loop_SecA
AAA_19
AAA_22
PT26-6P_helical
Motif
Other DBs
NCBI-ProteinID:
BBN80921
UniProt:
A0A5H2YKP8
LinkDB
All DBs
Position
1:complement(1065394..1067223)
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AA seq
609 aa
AA seq
DB search
MSEPVTFKSLDLSPAILKAVEEQGYKTPSEIQAQCIPLLLERKDVLGLAQTGTGKTAAFA
LPLLNNIDSATKQPQILVLTPTRELAIQVAEAFEQYAKYTKGVEVLALYGGQSYGIQLSA
LRRGAQIIVATPGRLIDHINRKTIDLSNLSALVLDEADEMLRMGFIDDVESIMEKTPENK
QTCLFSATMPKQIQSICAKYLDNAQQVHISARNSTVSTVEQVFWRASVHKNKAIVRFLEA
EEYDGAIVFVRTRNDTVQLAELLEHEGFSAAPLNGDMNQQARERTVERLKNGLLDIVIAT
DVAARGLDVDRLSLVINYDIPQDSEAYVHRIGRTGRAGRTGKAILFVKHNERYLLRNIVR
HTKSEIAEVELPSAKVVEAKRIASLQTKLSTALENKDITFFNEVAKDLAQKLELSAEDLA
GALLCLAQQQSPLKVEEIKFQRERRERDDRREGRGRDGARGAERGERKGRERSGERADRG
PRNSSQGPMDTYRIEVGRDHGVQVKNIVGAIANEADISSKFIGDIRLFNEHSTVQLPQNM
PADVVSHFQNVFICKRPMKLTKSSHPADAGNSEPRGDKKRSFKEPRNDGKRPPRRDGERK
ERRPVSFTA
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaccagtcacgtttaaatctttagatctttctcctgcaattttaaaagcagtc
gaagagcaaggatacaagacaccatctgagatccaagctcaatgtataccgttattgcta
gaaagaaaggacgtactgggactagcgcagacgggtacaggtaaaacagcagcatttgct
ttaccactattgaacaatattgactcggctactaaacagccacaaattttggtgttaaca
ccaactcgtgaacttgccattcaggtggcagaagcatttgaacaatatgctaaatacact
aagggcgtagaagtacttgctctttatggtggacaaagctatggcatccagttaagcgca
ttgcgccgtggtgcacaaattattgttgctacgccgggccgcttaattgaccacatcaac
cgtaaaacgattgatttgtctaacctaagtgcacttgtactagatgaagcagacgaaatg
ttacgcatgggtttcattgatgatgttgaaagcatcatggaaaaaaccccagaaaataag
caaacttgcttgttctctgcaacaatgccgaagcagatccagtctatttgtgcaaagtac
ttagacaatgctcaacaagttcacatctctgcacgtaactctaccgtttcgacagtagaa
caagtgttttggcgtgcaagtgttcacaaaaacaaagcaattgtgcgcttcttagaagca
gaagagtacgatggcgcgattgtatttgttcgtacacgtaacgacactgtacagttagca
gagttacttgagcatgaaggcttttcagcagcgccgcttaatggtgatatgaaccagcaa
gctcgtgagcgtacagtagaacgtttgaaaaatggccttctggatattgttatcgcaacc
gatgttgctgctcgtggtcttgatgttgaccgcttaagcttggttatcaactacgatatt
ccacaagacagtgaagcatatgtacaccgtattggccgtactggccgtgctggtcgtact
ggtaaagctatcttgttcgtgaagcacaatgaacgttatttattacgtaacattgtacgt
cacactaaatctgaaattgctgaagttgagcttccatctgcgaaagtagttgaagcaaaa
cgtatcgcaagtttgcaaactaaactttctaccgcattggaaaacaaagacatcacgttc
ttcaatgaggtagcaaaagatttagcccaaaaacttgagttaagtgctgaagatttagct
ggtgcgttgctgtgtttagcacaacaacaatcaccgttaaaagtggaagaaatcaaattc
cagcgtgagcgtcgtgagcgtgatgatcgtcgtgaaggtcgcggccgtgatggtgctcgt
ggtgctgaacgcggtgaacgcaagggtcgtgaacgttcaggtgagcgcgcagatcgcggt
ccacgcaacagctcgcaaggccctatggatacataccgtatcgaagtgggtcgtgaccat
ggtgttcaagttaagaacattgtaggtgcgattgcaaacgaagccgatatttcaagcaaa
tttattggtgacatacgtctgttcaatgagcacagtacggtacagttaccacaaaatatg
ccggcggatgttgtgtcacacttccaaaacgtatttatctgtaaacgtccaatgaagcta
accaagagttcacacccagcagatgcgggtaactcagagcctcgtggtgacaaaaagcgt
agctttaaagaaccacgtaacgatggtaagcgtccacctcgccgtgacggtgagcgtaag
gaacgacgccctgttagctttacagcctaa
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