Pseudomonas syringae pv. syringae B728a: Psyr_1040
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Entry
Psyr_1040 CDS
T00246
Name
(GenBank) RNA polymerase sigma factor, ECF subfamily
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
psb
Pseudomonas syringae pv. syringae B728a
Pathway
psb02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
psb00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Psyr_1040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psb03021
]
Psyr_1040
Transcription machinery [BR:
psb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Psyr_1040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_ECF
Sigma70_r4
HTH_23
GerE
HTH_20
HTH_24
HTH_11
TnsD
HTH_10
DUF3880
HTH_40
HTH_36
HTH_IclR
HTH_38
Motif
Other DBs
NCBI-ProteinID:
AAY36096
UniProt:
Q4ZXM6
LinkDB
All DBs
Position
complement(1175474..1175977)
Genome browser
AA seq
167 aa
AA seq
DB search
MPVAHSALNHTVEGLYRAHNAWLTTWLRRRLGCPHSAADLAQDTFIKVLGARDTAQIVEP
RAFLTTIAKRVLCNHYRRQDLEHAYYQALAELPERVAPSEEERAIILETLVELDQLLDGL
PALVKRAFLLSQVDGLSHGRIAAELGISIATVKRHLHKAALRCYFAL
NT seq
504 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtcgcccactccgctctcaatcacactgtcgaaggcctgtacagggcacacaac
gcctggctgacgacctggttgcgacgcagactcggctgcccgcacagcgcggcggacctg
gcgcaggacacctttatcaaggtgctgggcgcacgcgatacagcgcaaatcgtcgagccg
cgagcctttctgacgacgattgccaagcgtgtgctgtgcaatcactaccggcgtcaggac
ctggagcatgcctactatcaggcactggccgaactgccggagcgcgtggcgccttcggaa
gaagagcgggcgatcattctcgaaaccctggtcgaactcgatcaactgctggacggcctg
ccagcactggtcaagcgggcgtttctgctgtcgcaggtcgacggcttgagccatggccgg
atcgctgccgaactgggtatctccatcgccacggtcaagcgtcatctgcacaaggccgcc
ctgcgctgctatttcgccctatga
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integrated database retrieval system
