Pseudochrobactrum algeriensis: KHQ08_08500
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Entry
KHQ08_08500 CDS
T07380
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pscq
Pseudochrobactrum algeriensis
Pathway
pscq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pscq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KHQ08_08500 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pscq03400
]
KHQ08_08500 (mfd)
Enzymes [BR:
pscq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KHQ08_08500 (mfd)
DNA repair and recombination proteins [BR:
pscq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KHQ08_08500 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
AAA_16
ERCC3_RAD25_C
AAA_22
RecG_dom3_C
Glyoxalase_6
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
QVQ38017
LinkDB
All DBs
Position
1451701..1455198
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AA seq
1165 aa
AA seq
DB search
MPVFSKLGLKPVLVNHVLIDGVADGYEAFVLAKILEEAGGKGPVLFIARDGQRVADIEQV
IGFIMPELPVLHIPAWDCLPYDRVSPGATVSARRLNALSQLSALREQKHPALIIATANAV
LQKLPPRAVLDEQSFSARPGNRVNMDELTQRLERNGFERVPTVRDVGEFAVRGGILDLFV
PGAEEPLRLDFFGDTLESIRAFDPASQRTTETRKEFTLQPMSEITLSPDMISRFRKNYIA
AFGAPSRDDALYAAISEGRRFAGMEHWLPLFYDEMETLFDHTGAMPVVFDHLVPEAIAER
HKLVLDHYDARQKQAEGKEAADAIPYKPVAPSQLYMSLRKVEEAAEANGKRYDLTPFEAP
EASGRHIIHAGAHKGRSFAEERAAKDVNLFEAVTKYIAELRASGKKIMIAAWTEGSLDRL
LQVLDEHGLEKIETVKDLRTVKALSRDKITATVLAVESGFDAGDLVVVAEQDILGDRLIR
RTKKRKRDADFISEAGSLTAGDIVVHVDHGIGKFVGLRTITAAGAPHDCLELHYAGDDRL
FLPVENIELLSRYGSEGSSAVLDKLGGGAWQARKAKLKKQLLEMAGQLIRIAAERAMRGA
PVLTPPEGVYGEFAARFPYDETEDQQRAIDAIFDDLGDGKPMDRLVCGDVGFGKTEVALR
AAFVAALNGYQVAVVVPTTLLSRQHFKTFSTRFNGLPINVAHASRLVGSKELALTKKGVE
EGTVDIVVGTHALLGNSIKFKNLGLLIIDEEQHFGVKHKERLKDLKSDIHVLTLTATPIP
RTLQLALTGVRELSLITTPPVDRMAVRTFISPFDALVIRETLMRERYRGGQSFYVCPRIS
DLAEIKEFLDQHVPELKVAVAYGQMAAGELEDIMNAFYDGQYDVLLSTTIVESGLDIPTA
NTMIVHRADMFGLAQLYQLRGRVGRSKQRAFALFTLPAGKTLTQTAERRLKVLQSLDTLG
AGFQLASHDMDIRGAGNLLGDEQSGHIKEVGFELYQQMLEEAVAELKSEGPVVDSHWSPQ
IAVGTAVMIPETYVPDLQLRLGLYRRLADLETTQEIDGFGAELIDRFGPLPEEVQHLLKI
VFIKALCRKANVEKLDAGPKGIVIQFREKTFPNPAGLVQMIAAQGSLAKIRPDQSIVFIR
DYPTAEKRLTGSAVIMTQLAKIAGE
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtattttccaaacttggtctgaaaccggttctcgttaatcatgtgctgattgac
ggtgtagccgatggttatgaagcctttgtgctggccaagattttggaagaggcggggggt
aaagggcctgtcctgtttatcgcgcgcgacgggcagcgcgtggcagatattgagcaggtg
atcggctttattatgccggaactgccggtattgcatattcctgcatgggactgtctgccc
tatgaccgcgtttcccccggtgcaacagtctcggcgagacgtctgaatgcgctgagccag
ttgagcgccttgcgggagcagaaacatccggcgctgattattgccacagccaatgccgtg
ttgcagaagctgccgccgcgcgctgtgctggacgagcagagtttctctgcccgtcccggc
aaccgtgtgaatatggatgagctgacccagcgccttgagcgcaacggctttgaacgtgtg
ccgacggtacgtgatgtcggtgaatttgctgtacgcggtggtattcttgatctgttcgta
ccgggtgcagaagaaccgctgcgtctcgacttcttcggggatacgctggaaagcatccgt
gcttttgatccggcctcgcagcgtaccaccgagacgcgtaaggagtttacactccagccg
atgagcgagattacgctctcgccggatatgatcagccgtttccgtaagaactatattgcg
gcctttggtgcgccgtcacgtgatgatgcgctttatgctgcgatctcggaaggtcgtcgc
tttgccggtatggagcactggttaccgctgttctatgacgagatggaaacgctgttcgat
cacacaggcgcaatgccggtggtattcgatcatctggtgccggaagccattgccgagcgt
cacaagctggtgcttgaccattatgatgcccgccagaagcaagcagaaggcaaagaagca
gcagacgctattccctataagcctgtagcgccaagccagctctatatgtcgctgcgcaag
gtggaggaggcggcagaggccaatggcaagcgctatgatctcacgccttttgaagcgcct
gaggccagcggacgacatattatccatgcgggtgcccataaaggccgcagcttcgctgag
gaacgtgccgctaaagacgttaatctgttcgaggccgtaaccaaatatatcgctgagctg
cgtgccagcggcaaaaagatcatgatcgccgcatggacggaaggatcgcttgatcgtctg
ttgcaggtgctggacgaacatggtctggaaaagatcgagacggtcaaagacctgcgaact
gttaaagccctgtcgcgtgacaaaatcactgcgactgtgctggcggtagaaagcggcttt
gatgccggtgatctggttgtggtggccgagcaggatattctcggtgatcgtctgatccgc
cgtaccaaaaaacgcaaacgcgatgcggatttcatctccgaggccggtagtctgactgct
ggcgatatcgtggtgcatgtcgatcatggtatcggtaagtttgtcggtttgcgcacgatc
actgctgccggagcaccgcatgattgccttgaactccattatgccggtgacgaccgcctg
tttctgccggttgaaaatattgaactgctgtcacgctatggttcggaaggctcatccgcc
gttctggataagctcggcggcggcgcatggcaggcacgcaaggccaaactcaagaaacag
ctgctggaaatggccggacagcttattcgtattgctgcggaacgcgcaatgcgtggcgcg
ccggtgctgaccccgccggagggtgtctatggcgaatttgctgcccgtttcccttatgat
gaaacagaagaccagcaacgcgcgattgatgcgatatttgatgatcttggcgacggcaag
ccgatggatcgtctggtttgcggcgatgttggctttggtaaaaccgaagtcgcgctgcgt
gcggcctttgtagccgcgcttaatggctatcaggtggctgttgttgtgccgaccacactg
ctgtcgcgccagcatttcaagaccttctccacgcgctttaatggtctgccgatcaatgtt
gcccatgcttcacgtcttgtcggtagcaaagaattggcactgaccaagaagggcgttgaa
gaaggtactgtcgatatcgttgtcggcacccatgcgttgcttggcaattcgatcaagttc
aaaaatcttggtctgctgattatcgacgaagaacagcatttcggcgtgaagcataaagaa
cgcctgaaagacctgaaatccgatatccatgtgctgacactcaccgcaacgccgatcccg
cgcacgctgcagctggcgctcaccggcgtgcgtgaattgtcgctgattaccacgccgccg
gttgaccgtatggcggtgcgtaccttcatttcgccttttgacgcgctggtcattcgtgaa
accctgatgcgcgaacgctatcgcggcggtcagagtttctatgtctgcccgcgtatttcc
gatcttgccgagattaaggaattcctcgaccagcatgtaccggaactgaaagttgctgtc
gcctatggccagatggctgccggtgagctggaagacattatgaatgccttctatgacgga
caatatgatgtgctgctctccacaaccatcgtggaatccggtctggatattccgacagcc
aataccatgatcgtgcatcgtgcggatatgtttggtctggcacagctctatcagctgcgt
ggccgcgttggccgttccaagcagcgtgcattcgcgctgttcacattgcctgcgggcaaa
acgcttacccagacagccgaacgtcgccttaaagtgctgcaatcgctggatactttgggc
gctggtttccagcttgcgagtcacgatatggatattcgcggtgcgggtaacctgttgggt
gatgaacagtccggccatatcaaggaagtcggtttcgagctttatcagcagatgctggaa
gaggcggttgccgagctgaaatccgaaggccctgtggtggatagccattggtcgccacaa
attgcggttggcacggcggtgatgataccggaaacttatgtgcctgatttgcaattgcgt
ctggggctttatcgccgtctggccgatctggaaacaacgcaggaaattgacggttttggt
gccgagctgatcgaccgtttcggtccgctgccggaagaagtccagcacctgctcaagatc
gtgtttatcaaggcgctgtgccgcaaggccaatgttgagaaattggatgcagggccgaag
ggcattgttattcagttccgtgagaagaccttcccgaatccggcaggtctggtgcagatg
attgcggcacagggctcgctggcgaagatccggccggatcagagcattgtgtttatccgc
gattatccgaccgctgaaaaacgcctgaccggttcagccgtaatcatgacgcagttggca
aaaatcgccggagaataa
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