Pseudoxanthomonas spadix: DSC_12480
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Entry
DSC_12480 CDS
T01643
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
psd
Pseudoxanthomonas spadix
Pathway
psd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DSC_12480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psd03019
]
DSC_12480
03009 Ribosome biogenesis [BR:
psd03009
]
DSC_12480
Enzymes [BR:
psd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DSC_12480
Messenger RNA biogenesis [BR:
psd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DSC_12480
Ribosome biogenesis [BR:
psd03009
]
Prokaryotic type
rRNA helicases
DSC_12480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AER57140
UniProt:
G7URE8
LinkDB
All DBs
Position
complement(2515985..2517925)
Genome browser
AA seq
646 aa
AA seq
DB search
MSSENAAAAVPFSALGLSAPVMAALATVGYESPSPIQAATIPALLAGRDVLGTAQTGTGK
TAAFALPVLSNLDLAAGKPQALVLAPTRELAIQVAEAFQKYAASIPGFHVLPIYGGQAYA
PQLQALKRGVHVVVGTPGRVIDHLERGSLDLSGLATLVLDEADEMLRMGFIDDVETVLKK
TPETRQVALFSATMPPAIRRIAQTYLKDPVEVNIAARTTTSANITQRYWFVSGLHKLDAL
TRILEAEPFDGMIIFVRTKAATEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKL
DILVATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRAGDAILFVTPREKSM
LRAIERATRQPITEMQLPSVEDVNDRRVARFLARITDTLASGEAGQYRALIEGYEREHNV
PAVDIAAALARLLQGDTPLLLSAERSQARSSAEALGERNPRADRARYEGERSGPFGAAPA
RAQRSEHPRAERGPRSAPQPADASLPAAAERARRAPSAPAGEAEVGMERYRIEVGHAHGV
KPANIVGAIANEAGLESRYIGRIDIQEDHSVLDLPEGMPRELLMHLKKVWVSGQQLRIHK
LGEDAGEQAPRKFKPAAARTDARPRSFKSAPKAPAKPHRKGPPKPS
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccgaaaacgccgcagccgcggtgccgttctccgcccttggcctgtccgcgccg
gtcatggccgccctggccaccgtcggctacgaatcgccatcgccgatccaggccgcgacc
atcccggcgctgctggccggacgcgacgtgctgggcaccgcgcagaccgggaccggcaag
accgcggccttcgccttgccggtgctctccaacctggacctggccgccggcaagccgcag
gcgctggtcctggcgccgacccgcgagctggccatccaggtcgccgaggccttccagaag
tacgccgcctcgatccccgggttccatgtgctgccgatctacggcggccaggcctacgcg
ccgcagctgcaggcgctcaaacgcggcgtgcacgtggtggtcgggacgcccggccgggtg
atcgaccacctcgagcgcggctcgctggacctgtccggccttgccaccctggtcctggac
gaagccgacgaaatgctgcgcatgggcttcatcgacgatgtcgagacggtgctgaagaag
accccggaaacgcgccaggtggcgttgttctcggcgaccatgccgccggccatccgccgc
atcgcccagacctacctgaaggatccggtcgaggtgaacatcgcggccaggaccacgacc
tcggccaacatcacccagcgctactggttcgtctcgggcctgcacaagctcgacgcgctg
acccggatcctggaagccgaaccgttcgacggcatgatcatcttcgtgcgcaccaaggcg
gccaccgaagaactggcccagaagctgcaggcccgcggcctggccgcggccgcgatcaac
ggcgacatgcagcaggccgcgcgcgaaaagaccatcgcccagctcaaggacggcaagctg
gacatcctggtggccaccgacgtggccgcgcgcggcctggacgtggagcgggtgagccac
gtgctgaactacgacattccctacgacaccgaaagctacgtgcaccgcatcggccgcacc
ggccgcgccggccgcgccggcgacgcgatcctgttcgtgaccccgcgcgagaagtcgatg
ctgcgcgcgatcgagcgggccacccgccagccgatcaccgaaatgcagctgcccagcgtg
gaggacgtcaacgaccggcgcgtggccaggttcctggcccggatcaccgacaccctggcc
agcggcgaggcgggccagtaccgcgcgctgatcgaaggttacgagcgcgagcacaacgtg
ccggcggtggacatcgccgccgcgctggcgcgcctgctgcagggcgatacgccgctgctg
ctgtcggcagaacgtagccaggcgcgcagcagcgccgaggccctcggcgagcgcaacccg
cgtgccgaccgtgcgcgctacgaaggcgagcgcagcggcccgttcggcgcggccccggcg
cgtgcccagcgcagcgagcacccgcgcgccgagcgtgggccgcgcagtgcgccgcagccc
gcagacgcgtcgttgccggccgccgccgagcgtgcgcgccgggcaccgtccgcgccggcc
ggcgaggccgaggtcggcatggagcgctaccgcatcgaggtcggccacgcccacggcgtc
aagccggccaacatcgtcggcgccatcgccaacgaggccggactggaaagccgctacatc
ggccgcatcgatatccaggaggaccattcggtgctggacctgcccgaaggcatgccgcgc
gagctgctgatgcacctgaagaaggtctgggtgtccggccagcagctgcgcatccacaag
ctgggcgaggatgccggcgagcaggcgccgcgcaagttcaagccggccgccgcgcgcacc
gacgcgcgcccgcgcagcttcaagtccgcgcccaaggccccggccaagccgcaccgcaag
ggcccgccaaagccgtcgtga
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