Pseudomonas sp. CCOS 191: CCOS191_2691
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Entry
CCOS191_2691 CDS
T03967
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
psec
Pseudomonas sp. CCOS 191
Pathway
psec03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
psec00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CCOS191_2691
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psec03400
]
CCOS191_2691
Enzymes [BR:
psec01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CCOS191_2691
DNA repair and recombination proteins [BR:
psec03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CCOS191_2691
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
SL4P
Motif
Other DBs
NCBI-ProteinID:
CRI57227
UniProt:
A0A0F7Y8B8
LinkDB
All DBs
Position
I:3071830..3074301
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AA seq
823 aa
AA seq
DB search
MAKPLQEYQRKRDFNATPEPAGKRGRTGKAHALQFCIQKHDASHLHYDFRLELDGTLKSW
AIPKGPSLDPKVRRLAVHVEDHPLDYADFEGNIPEGHYGAGDVIVWDRGIWEPEGDPREA
YAKGKLRFRLQGEKLSGIWNLFRTHLAGKKEQWMLVKSHDGQARSETDYRIVEALPDSVL
SDRTLLPRQPAKTAAANKRKAKASPVALPDRLQPQLATLVDSPPGGHWHYEVKFDGYRIL
ARIEGEDVRLFTRNGHDWSAKMPRQVEALKALGLDSAWLDGEMVVVDDQGVADFQALQNA
FDTEHDEHITYYLFDLPYLGGEDLRQLPLQARRATLARLLENTPSDLLKFSADFTEPVDS
LLDSACRLKLEGLIGKRADSPYVGRRSSDWIKLKCKQRQEFVIVGYTDPKGSRNAFGALL
LALHDTDSGQLRYAGKVGTGFSATTLDSLHARLKPLEVDKPALPKPPRSAEARGVHWLKP
QLLVEVAYAQMTREGIVRHSVFHGLRDDKPATAIDLERAMPAKRAAQPPAETLGSLRLTH
PDRVVDASTGTTKRQVAEYYAQIADWLLPQLKDRPVALVRAPDGLGGELFFQKNAGQLHI
PAVHSYSKAQAGQAAMVLNRADSLLGAVQMNMLELHTWNATDKNFDKPDRFVLDLDPDPA
LPWKAMLEATQLTLTLLDELGLKVFLKTSGGKGMHLVVPLTRRAGWDEVKDFSHALVEHM
AGLFPERLSAVSGPRNRVGRIFIDYLRNGRGATTVAAYSLRAREGLPVSVPIWREELTQL
KGANQWHIGNLQARLAEVDDPWADMAKTRQSITVRMRKQLGID
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcccctgcaggagtaccagcgcaagcgcgacttcaacgccacgcccgaacct
gccggcaaacgcggccgcacgggcaaggcccatgccttgcagttctgcatccagaaacac
gacgccagccacttgcactacgactttcgcctggagctcgatggcaccttgaaaagctgg
gccattcccaagggcccctcgctcgaccccaaggtccgccgcctggccgtgcatgttgag
gatcacccgctggactacgccgatttcgaaggcaatatccccgaaggccactacggcgcc
ggtgacgtgatcgtctgggatcgtggtatctgggagcctgagggcgacccgcgcgaggcc
tacgccaagggcaagctgcgctttcgcctgcagggcgagaagctgtcaggtatctggaac
ctcttccgcacccacctggccggcaagaaggagcagtggatgctggtcaagtcccacgat
ggccaggcccgcagcgaaaccgactaccgcatcgtcgaagccttgccggacagcgtgctt
agcgaccgtaccctgctgccgcgccagcctgcaaaaacagccgctgccaacaaacgcaag
gccaaggccagccccgtcgccctgccggacaggctccagccgcaactcgccaccctggtc
gattcaccgcctggtggtcactggcactacgaggtgaagttcgacggctaccgcatcctc
gcccgcatcgaaggcgaggatgtgcggctgttcacccgtaatggccacgactggagcgcg
aagatgccgcgtcaggtcgaggccttgaaagcgctggggctcgattcggcgtggcttgat
ggcgagatggtggtggtcgacgaccagggtgtggccgacttccaggccttgcagaacgcc
ttcgacaccgagcacgacgaacacatcacctattacctgttcgacctgccctacctgggt
ggagaggatctgcgccagctaccgctgcaggcgcgacgtgccaccctggcccggctgctg
gaaaacacgccctcggacctcctcaagttctccgccgacttcaccgaaccggtcgactcg
ctgctcgacagcgcctgccgcctgaagcttgaaggcctgatcggcaagcgcgccgacagc
ccctacgtaggccggcgcagcagtgactggatcaagctcaagtgcaagcagcgccaggag
ttcgtgatcgtcggatacacagaccctaaaggcagccgcaacgccttcggcgccctgctg
ctggccctgcacgacaccgacagcggccagctgcgctatgccggcaaggtcggcaccgga
ttcagcgccaccacgctggacagcctgcatgcgcgcctcaagcccctggaagtcgacaag
ccggccttgcccaagccgccccgcagcgctgaggcccgtggcgtgcactggctcaagccg
caattgctggtcgaagttgcctacgcccagatgacccgcgaaggcatcgtccgtcactcg
gtgttccacggcctgcgcgacgacaaacccgccaccgccatcgacctggagcgtgccatg
cccgccaagcgcgccgcgcagccacccgccgagactctcggcagcctgcgcctgacccac
cccgaccgcgtggtcgacgccagcaccggcaccaccaagcgccaggtcgccgagtactac
gcccagatcgccgactggttgctgccgcaactcaaagaccgccccgtggcgctggtacgc
gcaccggacggactgggtggcgaactgttcttccagaagaacgccggccagctgcacatc
cccgcggtgcacagctacagcaaggcgcaggctggccaggcggcgatggtgctcaaccgc
gccgacagcctgttgggcgcggtgcagatgaacatgctcgaactgcacacctggaatgcc
accgacaagaatttcgacaagcccgaccgcttcgtcctcgacctcgaccccgatccggca
ctgccctggaaagccatgctcgaagcgacccagctgaccctcaccctgctcgatgagctg
ggcctgaaggtgttcctcaagaccagcggtggcaaaggcatgcacctggtggtgccgcta
acccgccgcgccggttgggatgaagtgaaggacttcagccatgccctcgtcgagcatatg
gcgggcctgttcccggagcggctgagcgccgtctccgggccccgcaaccgggttgggcgg
atcttcatcgactacctgcgcaacggcaggggcgccaccacggtcgcggcgtattcgctg
cgggcccgcgaggggctgccggtgtcggtgccgatctggcgcgaagagctgacccagctc
aagggcgccaaccagtggcacatcggcaacctgcaggcgcggctggccgaggtggacgac
ccatgggcggacatggccaagacccggcagtccatcaccgtacgcatgcgcaaacagctg
ggcatcgactga
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