Pseudomonas sp. CCOS 191: CCOS191_3579
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Entry
CCOS191_3579 CDS
T03967
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
psec
Pseudomonas sp. CCOS 191
Pathway
psec03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psec00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CCOS191_3579 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psec03400
]
CCOS191_3579 (mfd)
Enzymes [BR:
psec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CCOS191_3579 (mfd)
DNA repair and recombination proteins [BR:
psec03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CCOS191_3579 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AroM
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
CRI58115
UniProt:
A0A0F7Y0Q7
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All DBs
Position
I:4059088..4062513
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AA seq
1141 aa
AA seq
DB search
MSATAGKQTWGNLPGAALSLAVAEAASTAGRFTLLLTADSQAADRLEQELRFFAPELPVL
PFPDWETLPYDLFSPHQDIISQRIASLYRLPELDHGILVVPITTALHRLAPTRFLLGSSL
VLDVGQKVDVEQMRARLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKQPYRIDLFDDE
IETLRTFDPESQRSIDKVDSIRLLPAREFPMQKDEVTRFKARFRERFDVDFRRSAIFQDL
TSGIIPAGIEYYLPLFFEETATLFDYLPADTQVFSLPGVEQAAEHFWNDVRGRYEERRGD
MTRPLLPPAELFLPVEDCFARLKQWPRVVVSAEDLDAGAGRERFPARALPNLAIEAKAHQ
PLAELANFLDQFSGRVLFTAESAGRREVLLELLERLKLRPQTVDGWADFVTGGERLAITI
APLDDGLLLDDPAIALVAESPLFGQRVMQRRRREKRGEAANDAVIKNLTELREGAPVVHI
DHGVGRYLGLATLEIDGQAAEFLTLEYAEGAKLYVPVANLHLIARYTGSDDALAPLHRLG
SEAWQKAKRKAAEQVRDVAAELLDIYARRAARKGYAFADPAADYATFSAGFPFEETPDQQ
TAIEAVRADMLAGQPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAVLVPTTLLAQQHY
NSFRDRFADWPVKVEVMSRFKSAKEVASAAAELAEGKIDILIGTHKLLQDDVRFKDLGLA
IIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSV
RTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKSIEKCAAELAELVPEARIGIGHGQMR
ERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIVIERADKFGLAQLHQLRGRVGRS
HHQAYAYLLTPPRQQISADAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELLGEGQSGQ
IQAVGFTLYMEMLERAVKAIRKGTQPNLEQPLGGGPEINLRLPALIPEDYLPDVHARLIL
YKRIASAADEEGLKDLQVEMIDRFGLLPEPTKNLMRLTLLKLQAEKLGIKKVDAGPNGGK
LEFEAETPVDPLTLIKLIQGQPKRYKFEGATQFRFLVPMERPEERFNTLEALFERLTPQN
P
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccacggccggcaaacaaacctggggcaacctgcccggcgcggccttgagcctg
gccgtcgccgaggctgccagtaccgccggtcgcttcaccttgctgctgaccgccgacagc
caggcggccgaccgcctggagcaggagctgcgcttcttcgcgcctgaactgccggtgctg
cctttccccgactgggaaaccctgccctacgacctgttctcgccgcaccaggacatcatc
tcccagcgtatcgccagcctctaccggctgccggagctggaccacggcatcctcgtcgtg
ccgatcaccaccgccctgcaccgcctggcccccacgcgcttcctgctgggcagcagcctg
gtgctggacgtgggccagaaggtcgacgtcgagcagatgcgcgcgcgcctggaagccagc
ggctaccgctgcgtagacacggtctacgagcacggcgagttcgccgtgcgcggcgcgctg
atcgacctgttccccatgggcagcaagcagccgtaccgcatcgacctgttcgacgacgag
atcgagaccctgcgcaccttcgacccggagagccagcgctcgatcgacaaggtcgactcg
atccgcctgctgccggcgcgcgagtttcccatgcagaaggacgaggtgacgcgcttcaag
gcgcgcttccgtgaacgcttcgacgtcgacttccgccgcagcgcgatcttccaggacctc
accagcggcatcatccccgccggcatcgagtactacctgccgctgttcttcgaagaaacc
gccaccctgttcgactatctgccggccgacacccaggttttctcgctgccgggcgtggaa
caggccgcagaacacttctggaacgatgtgcgcgggcgctatgaagagcgccgcggcgac
atgacccggccactgctgccgccggcggaactgttcctgccggtggaggattgcttcgcc
cgcctcaagcaatggccacgggtggtggtcagcgccgaggacctcgacgccggcgcgggg
cgcgagcgcttccccgcccgcgccctgcccaacctggccatcgaggccaaggcccaccag
ccgctggcggaactggccaacttcctcgaccagttcagcggccgcgtgctgttcaccgcc
gagtccgcgggccggcgcgaagtgctgctggagctgctcgaacgcctcaagctgcgcccg
cagaccgtcgacggctgggccgacttcgtcaccggcggcgaacgcctggcgatcaccatc
gcccccctggacgacggcctgttgctggacgacccggccattgccctggtagcggaaagc
ccgctgttcggccagcgcgtgatgcagcgcagacgccgcgagaaacgcggcgaggcggcc
aacgacgcggtgatcaagaacctcaccgagctgcgcgaaggcgcgccggtggtgcacatc
gaccatggcgtgggccgctacctgggcctggccaccctggaaatcgacggccaggccgcc
gagttcctcaccctcgaatacgccgagggcgccaagctctacgtgccggtggccaacctg
cacctgatcgcccgctacaccggcagcgacgacgccctggccccactgcaccggctgggc
tccgaagcctggcagaaagccaagcgcaaggccgccgagcaggtgcgcgacgtcgccgcc
gagctgctcgacatctatgcccgccgcgccgcgcgcaaaggctatgccttcgccgacccg
gccgccgactacgccaccttcagcgccggcttcccgttcgaggaaacccccgaccagcag
accgccatcgaggccgtgcgtgccgacatgctcgccggccagcccatggaccgcctggtg
tgcggcgacgtcggcttcggcaagaccgaggtagccatgcgcgccgccttcatcgccgtg
cacagcggccgccaggtggcggtgctggtgcccaccaccctgctcgcccagcagcactac
aacagcttccgcgaccgcttcgccgactggccggtgaaggtcgaggtgatgagccgcttc
aagtcggccaaggaagtcgccagcgccgccgcggagctggccgaaggcaagatcgacatc
ctcatcggcacccacaagctgctgcaggacgatgtgcgcttcaaggacctgggcctggcc
atcatcgacgaagaacaccgcttcggcgtgcgccagaaggaacagctcaaggcgctgcgc
agcgaggtggacatcctcaccctgaccgcaacgccgattccgcgcacgctgaacatggcg
gtgtcgggcatgcgcgacctgtcgatcatcgccacgcccccggcgcggcgcctgtcggtg
cgcaccttcgtcatggagcagaacaagagcacggtgaaggaagcgctgctgcgcgaactg
ctgcgcggcggccaggtgtactacctgcacaacgatgtgaagagcatcgagaagtgcgcc
gccgagctggccgagctggtgcccgaggcacgtatcggcatcggccatgggcagatgcgc
gaacgcgagctcgagcaggtgatgagcgacttctatcacaagcgtttcaacgtgctgatc
gcctcgaccatcatcgagaccggcatcgacgtgccgagcgccaacaccatcgtcatcgag
cgcgccgacaagttcggcctggcgcaattgcaccagttgcgtggtcgggtcgggcgcagc
caccaccaggcctatgcctacctgctgacgccaccgcgccagcagatcagcgccgacgcc
gagaaacgcctggaggccatcgccaacacccaggacctcggcgcgggcttcgtcctggcc
accaacgacctggagatccgcggcgccggcgaactgctcggcgaaggccagagcgggcag
atccaggcggtcggcttcaccctgtacatggagatgctcgaacgcgcggtcaaggccatc
cgcaagggcacccaacctaacctcgaacagccgctgggcggcggcccggagatcaacctg
cgcctgccggcgctgatccccgaggactacctgcccgacgtgcatgcgcgcctgatcctc
tacaagcgcatcgcctcggcggccgacgaagagggcctcaaggacctgcaggtggagatg
atcgaccgcttcggcctgctgccggagccgaccaagaacctgatgcgcctgaccctgctc
aagctgcaggcggaaaagctcggcatcaagaaagtcgatgccggccccaacggcggcaag
ctcgagttcgaggccgaaaccccggtcgacccgctgaccctgatcaagctgatccagggc
cagcccaaacgctacaagttcgaaggcgcgacccagttccgcttcctggtgccgatggaa
cgccccgaagaacgtttcaacaccctggaagcgctgttcgagcgcctcaccccacaaaat
ccataa
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