Pseudodesulfovibrio sediminis: PSDVSF_02240
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Entry
PSDVSF_02240 CDS
T08380
Symbol
uvrB
Name
(GenBank) UvrABC system protein B
KO
K03702
excinuclease ABC subunit B
Organism
psef
Pseudodesulfovibrio sediminis
Pathway
psef03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psef00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PSDVSF_02240 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psef03400
]
PSDVSF_02240 (uvrB)
DNA repair and recombination proteins [BR:
psef03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PSDVSF_02240 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PSDVSF_02240 (uvrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
AAA_19
AAA_22
AAA
AAA_16
P-loop_SecA
SLFN-g3_helicase
T2SSE
Kinesin
Motif
Other DBs
NCBI-ProteinID:
BCS86982
LinkDB
All DBs
Position
238391..240391
Genome browser
AA seq
666 aa
AA seq
DB search
MPDFTLVSEYTLKGDQPAAVAELIAGLKGGVRDQVLLGATGTGKTFTMANVVAQLNRPAL
VLAPNKTLAAQLYTEFRGLFPDNAVEYFVSYYDYYQPEAYLPHSDVYIEKDSSINDDIDK
MRHAATHALLTRKDVLIIASVSCIYGLGSPEFYAKMVIPVEQGQILSMESLLERLVEIHY
ERNDYDFHRGTFRVRGDVVEIIPAYSREKALRIEFFGDEIDSICETDPLTGEIKDRLRKT
VIYPGSHFVSDRDNLDRAVSDIRDELQKRLAYLKGRNQLVEAQRLEQRTMYDLETIEELG
YCNGIENYSLHLDGRHTGQPPATLLDYFPDDFILFADESHIALPQVGGMFKGDRSRKTTL
VDFGFRLPSALDNRPLNYEEFQERINQAVYVSATPGPLEIDLAEGVVVEQIIRPTGLLDP
LVEVRKTQGQIDDLLAECKKRQARDERVLVTTLTKRMAEDLNEYLNQMGVEAKYLHSDID
TLERMAIIQALRAGEFFVLVGINLLREGLDIPEVSLVSILDADKEGFLRSTRSLIQTFGR
AARNSDGRVILYADKVTKSMAQAMDETSRRRQKQLEYNELNGITPTTIRKKVDNLFGELS
GGKVESSMGVAAEPGAGYGSDPKVLKKNIKRLEREMREAAKELEFERAAELRDRVALLRE
RILELG
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgcctgattttacgcttgtaagtgaatacaccctcaaaggagaccagcccgcggccgtg
gccgagcttattgcagggctgaaaggcggtgtgcgcgaccaggtcctgctgggtgcgacc
gggacaggaaagaccttcaccatggccaatgtggtggcccagctcaatcgtcccgccttg
gtgcttgctcccaataagacccttgccgcacagttgtatacggagtttcgtgggctcttc
cctgataacgcggttgaatatttcgttagttattacgactactaccagcccgaagcgtat
ctgccgcattcggatgtctacattgaaaaggattcgtccatcaatgatgacattgataag
atgcggcacgctgcgacccatgcattattgacgcgaaaagatgtactcatcattgcgtct
gtgtcctgtatctatgggcttggttccccggagttctatgccaaaatggtgattccggtt
gagcaggggcagatcttgtccatggagtcgcttctggagcggctggtggagatccattac
gaacgaaacgattatgattttcatcgtggtacattccgtgtgcgtggcgatgtggtggag
atcattccggcctatagccgcgaaaaagcattgcgcatcgaatttttcggcgacgaaatc
gactccatctgcgagactgacccgctgaccggcgagatcaaggacagactcagaaaaacc
gttatttatccgggcagtcacttcgtttcagacagggacaatcttgaccgtgccgtatct
gatatccgtgacgagctgcagaaacgccttgcctatctcaagggcaggaatcagttggtc
gaggcccagcgtcttgagcagcggaccatgtacgacctcgaaaccattgaggagcttgga
tactgtaatggtatcgagaactactccctgcatctggatggccgacataccgggcaaccg
ccggcaacgttgctcgattatttccctgacgattttatcctgtttgcggatgaatcccat
atcgccttgccgcaggtcggagggatgttcaagggagacaggtcgcgcaagaccacgttg
gtggatttcgggttccggctgccttcagccctggataaccgacctctcaattacgaagaa
tttcaggagcggataaatcaggccgtgtatgtgtcggctacgcccggccctcttgagatt
gatcttgcagagggtgtggtggtggagcagatcatccgtcccaccgggttgctggatcct
ctggtcgaagtgcggaaaacacaagggcagattgacgatttgcttgcggaatgtaagaaa
agacaagcgagagatgaacgggttttggtgaccacgttgaccaagcgtatggcagaggac
ctgaatgaatatctgaaccagatgggggtagaagccaagtaccttcattcagatattgat
acccttgagcggatggcaattattcaggcgcttcgtgccggtgaattttttgtgcttgtg
ggtattaatttgttgcgcgaaggccttgatatcccagaagtttcgttggtatcaatcctt
gacgccgataaggaggggttcctgcgctccacgcggtcgcttatccagacatttgggagg
gctgcacgaaactctgacgggcgggtcattctgtatgcagacaaggttacgaaatccatg
gcgcaggccatggatgaaaccagccgcaggcgtcagaaacagctggaatataatgagctt
aatggtatcacgcctaccactatccgtaaaaaagtcgacaatctctttggtgagctgtct
ggcggcaaggtggagtcttccatgggcgtggccgctgaacctggcgccggatacggaagt
gacccgaaggtcttgaaaaaaaatatcaagcggttggagcgtgaaatgcgcgaggcggca
aaagaactggaatttgagcgggcagcagaactcagggatcgtgttgccctgcttcgcgag
cgcatacttgagctggggtag
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